雖然這篇GenomicFeatures鄉民發文沒有被收入到精華區:在GenomicFeatures這個話題中,我們另外找到其它相關的精選爆讚文章
[爆卦]GenomicFeatures是什麼?優點缺點精華區懶人包
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#1GenomicFeatures - Bioconductor
A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of ...
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#2GenomicFeatures
The GenomicFeatures package contains functionality for so-called transcript database or TxDb objects. These objects contains a coherent interface to ...
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#3GenomicFeatures - Bioconductor
A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of ...
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#4Bioconductor/GenomicFeatures: Conveniently import and ...
GenomicFeatures is an R/Bioconductor package for conveniently importing and querying gene models in R. See https://bioconductor.org/packages/GenomicFeatures ...
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#5GenomicFeatures package - RDocumentation
A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations ...
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#6GenomicFeatures | Lok Raj Joshi
GenomicFeatures and BSgenome are two widely used packages for genomic data analysis in R Bioconductor. They have variety of functions to work with genome ...
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#7Bioconductor Genomicfeatures - :: Anaconda.org
conda install -c bioconda bioconductor-genomicfeatures conda install -c bioconda/label/gcc7 bioconductor-genomicfeatures
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#8GenomicFeatures - Week Two | Coursera
GenomicFeatures 18:30 ... So let's load genomic features and let's load a transcript database that is available for download for Bioconductor.
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#9GenomicFeatures Conveniently import and query gene models
GenomicFeatures : Conveniently import and query gene models. A set of tools and methods for making and manipulating transcript centric annotations.
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#10Problems With Bioconductor'S Genomicfeatures Package
But you did load the library with?: library("GenomicFeatures"). you can check for installed packages with: installed.packages().
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#11Genomic Features - PATRIC Documentation
Genomic Features are defined segments of a genome. Most often features will code for proteins or RNAs, however some correspond to pseudogenes or repeat ...
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#12GenomicFeatures - JuliaHub
The GenomicFeatures package provides utilities for working with interval based genomic annotations. It builds on IntervalTrees to provide a data-structures ...
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#13Details of package r-bioc-genomicfeatures in bionic
Links for r-bioc-genomicfeatures · Ubuntu Resources: · Maintainer: · Original Maintainers (usually from Debian): · External Resources: · Similar packages:.
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#14Multimodal genomic features predict outcome of immune ...
Multimodal genomic features predict outcome of immune checkpoint blockade in non-small-cell lung cancer · Abstract. Despite progress in ...
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#15Hidden genomic features of an invasive malaria vector ...
Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly.
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#16Genomic Features of Parthenogenetic Animals - PubMed
Case studies of individual parthenogenetic animals have reported peculiar genomic features that were suggested to be caused by their mode of ...
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#17Genomic features that regulate gene expression, with Ensembl
Gene expression is controlled by a complicated network of transcription factors and repressors, interacting with genomic features such as promoters and ...
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#18Genomic Features for Desiccation Tolerance and Sugar ...
Genomic Features for Desiccation Tolerance and Sugar Biosynthesis in the Extremophile Gloeocapsopsis sp. UTEX B3054. Catalina Urrejola 1, Jaime ...
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#19Genomic features of Mycobacterium avium subsp. hominissuis ...
Genome analysis on MAH of human isolates has been proceeding, however, those of pigs are limited despite its potential source of infection to ...
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#20Details of package r-bioc-genomicfeatures in sid
A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of ...
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#21GenomicFeatures Package Installation Trouble - Stack Overflow
Anyway, I tried installing GenomicFeatures as suggested by the BC website. > source("http://bioconductor.org/biocLite.R") > biocLite ...
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#22Genomic features of lactic acid bacteria effecting ...
As the list of genomic features in LAB expands, the need to characterize or confirm genes important in bioprocessing and health will increase exponentially.
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#23Genomic Features and Molecular Function of a Novel Stress ...
... specific genes involved in stress resistance and biocontrol, thus providing a new perspective on the genomic features of the extremophilic Bacillus species.
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#24Genomic Features of Radiation-Associated Muscle-Invasive ...
We sought to characterize the genomic features of RA-MIBC to assess whether the underlying genetic alterations differ from primary ...
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#25Bioconductor系列之GenomicFeatures | 生信菜鸟团
Bioconductor系列包的安装方法都一样. source("http://bioconductor.org/biocLite.R")biocLite(“GenomicFeatures”). 安装成功之后就可以找到这个包自 ...
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#26Identification of Genomic Features in Environmentally Induced ...
The current study identified genomic features associated with sperm epimutations that may explain in part how these sites become susceptible ...
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#27Pathomic Fusion: An Integrated Framework for Fusing ... - arXiv
Title:Pathomic Fusion: An Integrated Framework for Fusing Histopathology and Genomic Features for Cancer Diagnosis and Prognosis.
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#28Handling genomic data using Bioconductor II - Hao Wu ...
GenomicRanges and GenomicFeatures ... Genomic “Features” (e.g., genes, exons, CpG islands) on the ... GenomicFeatures: package for transcript centric.
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#29Genomic Features and Classification of Homologous ...
Homologous recombination deficiency (HRD) in pancreatic ductal adenocarcinoma (PDAC), remains poorly defined beyond germline (g) alterations in ...
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#30[R]bioconductor之GenomicFeatures学习 - 简书
GenomicFeatures 包主要提供了TxDb对象结构。基于此对象的操作,we can easily download the genomic locations of ...
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#31BIO206 - Practical 5 - GenomicFeatures R package - RPubs
Install the bioconductor packages. # install the required packages source("http://bioconductor.org/biocLite.R") biocLite(c("Biostrings", " ...
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#32Genomic features and evolution of the conditionally ...
Summary The tangerine pathotype of the ascomycete fungus Alternaria alternata is the causal agent of citrus brown spot, which can result in ...
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#33Predicting Discovery Rates of Genomic Features | Genetics
Finally, we show how the linear programming method can also predict discovery rates of various genomic features, such as the number of transcription factor ...
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#34[Bioc-devel] making txdb, and propagating metadata from ...
here's some example code: > > library(GenomicFeatures) > library(AnnotationHub) > ah <- AnnotationHub() > z <- query(ah, c("Ensembl","gtf" ...
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#35a question about the use of R package-GenomicFeatures
it sounds no problem. however, when i type R and enter the R command, >library(GenomicFeatures) >txdb<- makeTranscriptDbFromUCSC(genome='hg19 ...
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#36Genomic features of transcriptional readthrough | PNAS
We explore genomic features of readthrough transcripts and show they exhibit a unique chromatin signature, suggesting readthrough transcription ...
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#37Public data sources for regulatory genomic features - De Gruyter
Regulatory genomic features can be divided into different subclasses: (i) those that are encoded in the DNA sequence per se, e. g., TFBSs, ...
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#38Webinar: Genomic features that regulate genes - YouTube
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#39pyranges.genomicfeatures
Return the transcription start sites. Returns the 5' for every interval with feature “transcript”. See also. pyranges.genomicfeatures.GenomicFeaturesMethods.tes ...
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#40[annotation] GenomicFeatures - bioconductor中文 - 生信技能树
`r Biocpkg(“GenomicFeatures”)`包含所谓的转录数据库或* TxDb *对象的功能函数。 这些对象包含一个连续的转录本的接口,Transcripts是复杂的因为高等的 ...
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#41Genomic Features of Environmental and Clinical Vibrio ...
General genomic features of V. parahaemolyticus clinical isolates. To depict the genetic diversity of pathogenic V. parahaemolyticus strains, 38 ...
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#42Genomic features of coxsackievirus A6 correlate with ...
Conclusion: These findings provide insights into viral genomic features correlated with CVA6 pathogenicities. Keywords:.
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#43Comparative Genomics Research Program - | National ...
... approaches that can be used to understand genome structure and function and the relationship between genomic features and phenotypes.
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#44SARS-CoV-2 variants of concern and variants ... - GOV.UK
UKHSA will continue to designate new variants based on genomic features and growth, and these will receive a variant number (V-date-number) ...
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#45Prediction of drug candidates for clear cell renal ... - The Lancet
BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010; 26: 841-842.
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#46Adaptive changes of the autosomal part of the genome in a ...
2010BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-842. (doi:10.1093/bioinformatics/btq033) ...
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#47First Goat Genome Facilitates De Novo Assembly Of Large ...
... for small ruminant animals and may help to advance the understanding of distinct ruminants' genomic features from non-ruminant species.
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#48Galectins: An Ancient Family of Carbohydrate Binding ...
These conserved exon structural and genomic features are found among all known chordate galectin genes, supporting a model in which a single ...
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#49Position Description - PageUp
effectively combining mouse and human genomic features. • Develop expertise with new analysis methodologies as they become relevant to PTI ...
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#50Sci-News.com: Breaking Science News
Scientists Propose Nine Steps to De-Extinction of Tasmanian Tiger · The genomic features of the genome of the autotetraploid potato (Solanum tuberosum): ( ...
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#51Gammaproteobacteria - Wikipedia
The class Gammaproteobacteria belongs to the Pseudomonadota phylum and contains about 250 ... "Physiological and genomic features of a novel sulfur-oxidizing ...
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#52Concurrent TP53 mutations facilitate resistance evolution in ...
Associations between TP53 mutation status, genomic features, and mutational processes were analyzed. RESULTS: 269 patients were identified ...
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#53Nature's neglected GoF laboratory - The Protagonist Future ...
the genomic features of SARS-CoV-2. the early epidemiology in Wuhan. the coronavirus lab work performed by scientists.
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#54APOBEC SBS13 Mutational Signature—A Novel Predictor of ...
This study aims to identify the characteristic clinicopathological and genomic features in RAI-refractory PTCs that can help predict RAI ...
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#55Comparative Genomics - Google 圖書結果
... activities that derive biological insights by comparing genomic features. ... the similarity and differences in genomic features and trace their origin, ...
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#56Bioinformatics Research and Applications: 9th International ...
... and then second predicting novel genomic features by applying the SVM classification method to regions currently labeled as intergenic.
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#57Recent Advances In Human Retroviruses: Principles Of ...
Cell-Specific Genomic Features Many interesting genomic features to be associated with retroviral target-site selection are not universally defined, ...
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#58Genetics of Mental Retardation: An Overview Encompassing ...
Our current understanding of specific genomic features contributing to recurrent rearrangements is discussed below. The Segmental Duplication Architecture ...
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#59Systematic identification of silencers in human cells
The pie chart indicates the distribution of silencers in genomic features. The bar plot indicates the distribution of silencers in the ...
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