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#1GenomicAlignments - Bioconductor
Provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This ...
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#2Representation and manipulation of short genomic alignments
GenomicAlignments is an R/Bioconductor package for representing and manipulating short genomic alignments (typically aligned reads).
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#3GenomicAlignments - Bioconductor
Provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This ...
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#4GenomicAlignments package - RDocumentation
Provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome).
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#5Bioconductor Genomicalignments - :: Anaconda.org
Provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This ...
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#6Representation and manipulation of short genomic alignments
GenomicAlignments : Representation and manipulation of short genomic alignments ... Provides efficient containers for storing and manipulating short genomic ...
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#7GenomicAlignments - bio.tools
GenomicAlignments (biotools:genomicalignments) ID Verified · OpenEBench ... Provides efficient containers for storing and manipulating short genomic alignments ( ...
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#8Package Recipe 'bioconductor-genomicalignments' - Bioconda
biotools: genomicalignments. Provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads ...
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#9GenomicAlignments - Mathematical software - swMATH
Bioconductor/R package GenomicAlignments: Representation and manipulation of short genomic alignments. Provides efficient containers for storing and ...
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#10Session 4: Next-gen sequencing data analysis - trii.org
library (GenomicRanges) library (Rsamtools) library (GenomicAlignments) library (GenomicFeatures) library (DESeq) ?GRanges.
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#11Details of package r-bioc-genomicalignments in focal
Links for r-bioc-genomicalignments · BioConductor representation and manipulation of short genomic alignments · Other Packages Related to r-bioc-genomicalignments ...
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#12An Introduction to the GenomicAlignments Package
The GenomicAlignments package serves as the foundation for representing genomic alignments within the. Bioconductor project.
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#13Genomic Alignments - Working with aligned nucleotides
This task can be accomplished with the summarizeOverlaps function provided in the GenomicAlignments package and is explained in details in the “Counting ...
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#14Bioconductor系列之GenomicAlignments | 生信菜鸟团
R")biocLite(“GenomicAlignments”). 这个包设计就是用来处理bam格式的比对结果的，具体功能非常多，其实还不如自己写脚本来做这些工作，更方便一点， ...
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#15Download stats for experiment package GenomicAlignments
Download stats for experiment package GenomicAlignments. This page was generated on 2022-03-05 12:26:38 -0500 (Sat, 05 Mar 2022).
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#16R: Extract junctions from genomic alignments - University of ...
junctions-methods {GenomicAlignments}, R Documentation. Extract junctions from genomic alignments ... [Package GenomicAlignments version 1.14.2 Index].
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#17Package 'GenomicAlignments' - CiteSeerX
Package 'GenomicAlignments'. September 23, 2014. Title Representation and manipulation of short genomic alignments.
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#18using asMates=TRUE and yieldSize with paired-end BAM files
[Bioc-devel] GenomicAlignments: using asMates=TRUE and yieldSize with paired-end BAM files. Valerie Obenchain vobencha at fhcrc.org
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#19GenomicRanges HOWTOs
Single-end reads can be loaded with the readGAlignments function from the GenomicAlignments package. <<readGAlignments2>>= library(GenomicAlignments) gal ...
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#20PiGx RNA-seq - MDC Berlin
... is computed using GenomicAlignments, outputing bigwig files. Gene-level expression counts is obtained from GenomicAlignments::summarizeOverlaps, ...
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#21Index of /pub/gnu_linux/raspbian/pool/main/r/r-bioc ...
Index of /pub/gnu_linux/raspbian/pool/main/r/r-bioc-genomicalignments. Name Last modified Size Description ...
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#22Index of /raspberry-pi-os/raspbian/pool/main/r/r-bioc ...
Index of /raspberry-pi-os/raspbian/pool/main/r/r-bioc-genomicalignments/ | 清华大学开源软件镜像站，致力于为国内和校内用户提供高质量的开源软件镜像、Linux ...
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#23Introduction to Bioconductor for Sequence Data - DockFlow
Rsamtools and GenomicAlignments for aligned read (BAM file) I/O and data manipulation. rtracklayer for import and export of diverse data formats (e.g., BED, ...
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#24r-bioc-genomicalignments_1.18.1-1_amd64.deb - Debian ...
Description. r-bioc-genomicalignments - BioConductor representation and manipulation of short genomic alignments. Property, Value. Operating system, Linux.
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#25bioconductor v3.9.0 GenomicAlignments - Homolog.us
The sequenceLayer function in the GenomicAlignments package for laying the query sequences alongside the "reference" or "pairwise" spaces.
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#26coverage-methods - R Graphical Manual
Type 'q()' to quit R. > library(GenomicAlignments) Loading required package: BiocGenerics Loading required package: parallel Attaching package: ...
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#27/usr/lib/R/site-library/GenomicAlignments/doc/index.html
/usr/lib/R/site-library/GenomicAlignments/doc/index.html is in r-bioc-genomicalignments 1.0.6-1. This file is owned by root:root, with mode 0o644.
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#28List of software and databases. - Life Science Alliance
GenomicAlignments, http://bioconductor.org/packages/release/bioc/html/GenomicAlignments.html ; STRING database, http://string-db.org/ ; JASPAR motif database ...
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#29Index of /ubuntu/pool/universe/r/r-bioc-genomicalignments - Size
Index of /ubuntu/pool/universe/r/r-bioc-genomicalignments. Icon Name Last modified Size. [PARENTDIR] Parent Directory - [ ] ...
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#30Index of /mirror/pool/main/r/r-bioc-genomicalignments
Name Last modified Size Parent Directory ‑ r‑bioc‑genomicalignments_1.0.6‑1.debian.tar.xz 2014‑09‑17 06:19 5.9K r‑bioc‑genomicalignments_1.0.6‑1.dsc 2014‑09‑17 06:19 2.3K
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#31GenomicAlignments: 用R处理+操作BAM文件 - 简书
GenomicAlignments 可以高效储存和操作短序列比对(short genomic alignments) ，包括read counting, computing the coverage, junction detection, ...
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#32Index of /kali/pool/main/r/r-bioc-genomicalignments/
Index of /kali/pool/main/r/r-bioc-genomicalignments/ ../ r-bioc-genomicalignments_1.16.0-2+b1_amd64.deb 13-Jun-2018 12:03 2093728 ...
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#33install.packages("shazam") does not work - Bitbucket
ERROR: dependencies 'Biostrings', 'GenomicAlignments', 'IRanges' are not available for package 'alakazam' * removing ...
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#34Why should I use GenomicAlignments R package? - Reddit
I have used RangedSummarizedExperiment, but I am confused about what the use case for genomicalignments would be.
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#35Package: R-GenomicAlignments - Remi's RPM repository
Package: R-GenomicAlignments. Upstream info. Summary: Representation and manipulation of short genomic alignments. Description:.
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#36GenomicAlignments: 用R处理+操作BAM文件 - Excel技巧
GenomicAlignments 可以高效储存和操作短序列比对(short genomic alignments) ，包括read counting, computing the coverage, junction detection, ...
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#37Representation and manipulation of short genomic alignments
Package 'GenomicAlignments'. March 11, 2022. Title Representation and manipulation of short genomic alignments. Description Provides efficient containers ...
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#38Computational Genomics with R - 第 305 頁 - Google 圖書結果
... an unspecified genome Wewill use the summarizeOverlaps() functionfrom the GenomicAlignments package to count the number of reads in each genomic window.
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#39Primer to Analysis of Genomic Data Using R
For this we need to install some additional Bioconductor packages that can read the BAM file (GenomicAlignments) and create a database of transcripts ...
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#40Molecular Data Analysis Using R - 第 84 頁 - Google 圖書結果
Functions from the GenomicAlignments package (Lawrence et al. 2013) can perform the most basic access to aligned reads stored in BAM files.
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#41r - 无法安装套件GenomicAlignments
请为此提出解决方案。谢谢！ 我一直在尝试安装此软件包 GenomicAlignments ，并不断出现此错误： > install.packages("GenomicAlignments") Installing package into ...
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