雖然這篇FastTree鄉民發文沒有被收入到精華區：在FastTree這個話題中，我們另外找到其它相關的精選爆讚文章
[爆卦]FastTree是什麼？優點缺點精華區懶人包
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#1FastTree 2.1: Approximately-Maximum-Likelihood Trees for ...
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle alignments with ...
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#2FastTree 2 – Approximately Maximum-Likelihood ... - PLOS
Here, we describe FastTree 2, a tool for inferring ML trees for large alignments. Besides constructing an initial tree with neighbor joining and ...
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#3FastTree：快速对成千上万条序列构建进化树
FastTree 是一款从成千上万条，甚至更多的蛋白质序列或者核苷酸序列中快速推断近似最大似然的系统发生树的软件（approximately-maximum-likelihood phylogenetic ...
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#4FastTree: Computing Large Minimum ... - Oxford Academic
FastTree counts the fraction of resamples that support a split over the two potential NNIs around that node, much as it does while using NNIs to improve the ...
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#5TreeExtensions.FastTree 方法(Microsoft.ML)
使用[ FastTreeBinaryTrainer advanced options] 建立，此選項會使用決策樹二元分類模型來預測目標。 FastTree(RankingCatalog+RankingTrainers, FastTreeRankingTrainer+ ...
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#6FastTree 2 – Approximately Maximum-Likelihood ... - NCBI
FastTree optimizes the likelihood of the tree (with fixed branch lengths and topology) by numerically optimizing each of the six parameters in the model in turn ...
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#7FastTree - bio.tools
FastTree (biotools:fasttree) ID Verified · OpenEBench ... Infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein ...
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#8FastTree | Geneious
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle alignments with ...
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#9fasttree - create phylogenetic trees from alignments of ...
fasttree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a ...
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#10Fasttree - :: Anaconda.org
0. FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences.
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#11FastTree 2.1.10 - BioWeb
FastTree 2.1.10. FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. Topics: Phylogenetics ...
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#12FastTree - Bioinformatics Workbook
FastTree. A phylogenetic tree is a hypothesis of the evolutionary inheritance of genes across individual taxa. Trees have been used to ...
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#13Approximately Maximum-Likelihood Trees for Large Alignments
FastTree 2 inferred a topology and likelihood-based local support values for 237,882 distinct 16S ribosomal RNAs on a desktop computer in 22 hours and 5.8 ...
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#14FastTree - UFRC Help and Documentation
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle ...
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#15Not so fast, FastTree - the Darling lab
Not so fast, FastTree · sequence genomic DNA from a bunch of cultured isolates · map each isolate's reads to a closely related reference genome ...
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#16FastTree - Metagenomics wiki
wget http://meta.microbesonline.org/fasttree/FastTree.c. # compile with double precision. gcc -DUSE_DOUBLE -O3 -finline-functions -funroll-loops -Wall -o ...
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#17Package Recipe 'fasttree' — Bioconda documentation
recipe fasttree. FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. Homepage.
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#18Help with FastTree - getting a blank tree file - Biostars
You don't have FastTree installed where you think it is from the look of it. Ignore the rest of the line, just type ./fasttree . If you get anything other ...
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#19Fasttree function - RDocumentation
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences.
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#20FastTree2 - CIPRES
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. According to the authors, FastTree ...
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#21fasttree(1) - Debian Manpages
fasttree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences.
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#22A hardware KD-tree construction acceleration engine for real ...
FastTree was validated by an FPGA prototype and evaluated as an ASIC implementation. Experiment result shows FastTree outperforms existing hardware construction ...
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#23fasttree | The Minnesota Supercomputing Institute
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle alignments with ...
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#24FastTree – Arkin Laboratory
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle ...
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#25fasttree - Galaxy | Tool Shed
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. This version is just suitable for ...
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#26fasttree-software [ILRI Research Computing]
FastTree. FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle ...
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#27FastTree - Approximately-Maximum-Likelihood Trees for ...
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle alignments with ...
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#28fasttree - OpenEBench
Description : Infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. OS : Linux Windows ...
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#29FastTree 2--approximately maximum-likelihood trees for large ...
We recently described FastTree, a tool for inferring phylogenies for alignments with up to hundreds of thousands of sequences. Here, we describe...
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#30fasttree/2.1.8 — Research Computing Center Manual
8. description: FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. url ...
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#31Download FastTree 2.1.3 - Softpedia
FastTree is a handy, easy to use, command prompt based tool specially designed to infer approximately-maximum-likelihood phylogenetic trees ...
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#32FastTree:速度最快的最大似然法进化树构建软件 - 腾讯云
FastTree 是基于最大似然法构建进化树的软件，它最大的特点就是运行速度快，支持几百万条序列的建树任务。官方的说法是，对于大的比对数据 ...
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#33Microsoft.ML.FastTree 1.7.0 - NuGet
FastTree 1.7.0 Prefix Reserved. Package Manager .NET CLI; PackageReference; Paket CLI; Script & Interactive; Cake. Install-Package Microsoft.ML.
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#34RRID:SCR_015501 - SciCrunch | Research Resource Resolver
Proper Citation: FastTree (RRID:SCR_015501). Description: Source code that infers approximately-maximum-likelihood phylogenetic trees from alignments of ...
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#35Documentation | Software | fasttree - HPC@LSU - Louisiana ...
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle alignments with ...
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#36Approximately Maximum-Likelihood Trees for Large Alignments
Background: We recently described FastTree, a tool for inferring phylogenies for alignments with up to hundreds of thousands of sequences.
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#37Image Layer Details - evolbioinfo/fasttree:v2.1.9 - Docker Hub
evolbioinfo/fasttree:v2.1.9. Digest:sha256:f80c821c6ae29429be3832a20fcd7c0ca596ac536035e67e5dd78f23a94e77a6. OS/ARCH. linux/amd64. Compressed Size. 41.69 MB.
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#38citiususc/veryfasttree: Speeding up the estimation of ... - GitHub
It is important to highlight that VeryFastTree keeps unchanged the phases, methods and heuristics used by FastTree-2 to estimate the phylogenetic tree. In this ...
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#39FastTree: a hardware KD-tree construction acceleration ...
A dedicated hardware architecture, FastTree, was proposed for kd-tree construction by adopting a fully parallel construction algorithm.
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#40fasttree | ITS Advanced Research Computing
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle alignments with ...
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#41FastTree - Mathematical software - swMATH
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences.
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#42FastTree: computing large minimum evolution trees with ...
We present FastTree, a method for constructing large phylogenies and for estimating their reliability. Instead of storing a distance matrix, ...
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#43FastTree: Computing Large Minimum Evolution Trees with ...
FastTree is a method for constructing large phylogenies and for estimating their reliability, instead of storing a distance matrix, ...
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#44How to Install fasttree in Ubuntu 18.04
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a ...
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#45FastTree 2.1.11-GCCcore-9.3.0 - BEAR Applications
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle ...
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#46FastTree 2 – Approximately Maximum-Likelihood ... - Figshare
We recently described FastTree, a tool for inferring phylogenies for alignments with up to hundreds of thousands of sequences.
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#47fasttree - Software - LONI HPC
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle alignments with ...
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#48Obtaining BinaryClassification FastTree FeatureNames for PFI ...
I've built a simple BinaryClassification FastTree model in ML.net 1.0.0 using a subset of columns in my trainingDataView.
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#49非常快速的建树软件FastTree - 彭友松的博文 - 科学网—博客
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of. nucleotide or protein sequences. FastTree can handle ...
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#50biocontainers/fasttree - Quay.io
Fasttree. Fasttree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. Licence: Gpl V2.
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#51手把手教你用Fast Tree 快速構建序列進化樹
在默認參數下，FastTree 比PhyML 更準確，比PhyML 快100～1000 倍； ... 最大似然樹構建：FastTree protein alignment file > tree.
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#52RAxML and FastTree: Comparing Two Methods for Large ...
Interestingly, the relative accuracy of trees computed using FastTree and RAxML depends in part on the accuracy of the sequence alignment and ...
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#53FastTree:速度最快的最大似然法进化树构建软件 - CSDN博客
欢迎关注”生信修炼手册”!FastTree 是基于最大似然法构建进化树的软件，它最大的特点就是运行速度快，支持几百万条序列的建树任务。官方的说法是， ...
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#54fasttree 2.1.10 — Packages - GNU Guix
FastTree can handle alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is ...
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#55FastTree - Mississippi Center for Supercomputing Research
FastTree. FastTree is available on Maple: module load fasttree. Sidebar Contactblock. For Assistance; 662-915-3036 · [email protected] ...
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#56FastTree » EvoPhylo - Dr Dave Lunt
It might be the biggest published tree I know of too, but Morgan Price on the FastTree site has a 16S rDNA tree to download containing “186,743 distinct ...
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#57Error phylogen (fasttree) - User Support - QIIME 2 Forum
Hi Everyone! Hello, I am all experiencing a problem with the creation of a phylogenetic tree using the “fasttree” program since I apparently ...
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#58FastTree - NEBC Homepage —
Name, FastTree. Description, FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences.
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#59手把手教你用Fast Tree 快速构建序列进化树
在默认参数下，FastTree 比PhyML 更准确，比PhyML 快100～1000 倍；. 2. FastTree 使用模型为：核酸进化模型：Jukes-Cantor 或者GTR（generalized ...
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#60FastTree and FastList - CodeProject
FastTree is more complex to usage because it requires tree data structure. To start tree building, call public method void Build(object root) , where root – is ...
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#61FastTree - MetaCentrum
Description. FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences.
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#62Fasttree related error messages obtained by Glasgow co-worker
The following probably fasttree related error messages were obtained by a Glasgow co-worker, but he cannot put them here, hence, ...
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#63FastTree:速度最快的最大似然法进化树构建软件
FastTree 是基于最大似然法构建进化树的软件，它最大的特点就是运行速度快，支持几百万条序列的建树任务。官方的说法是，对于大的比对数据 ...
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#64What is the best method to estimate a phylogenetic tree from a ...
This paper claims that FastTree is almost as accurate as RAxML, while being much faster. You just have to be careful, however, that the support values ...
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#65How To Install "fasttree" Package on Ubuntu - ZoomAdmin.com
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a ...
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#67BioHPC Cloud: User Guide - CBSU
export PATH=/programs/FastTree-2.1.10:$PATH and then use it directly by typing program name at the prompt. There are 1 previous version(s) available.
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#68fasttree - OnWorks
NAME. fasttree - create phylogenetic trees from alignments of nucleotide or protein sequences · DESCRIPTION. fasttree infers approximately-maximum-likelihood ...
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#69FastTree - Free Software Directory
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments ...
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#70适用于大数据集进化树构建的Fasttree安装及使用
于是昨晚尝试使用Fasttree对约7000条序列构建进化树，耗时约4h30min。这就很快了。 下面还是使用hsp20基因的alignment.fasta进行操作。
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#71FastTree | Alabama Supercomputer Authority
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. Tool Web Link:.
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#72documentation:tools:software:fasttree[PSMN]
FastTree. infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences.
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#73fasttree 2.1.10-1 source package in Ubuntu - Launchpad
fasttree : phylogenetic trees from alignments of nucleotide or protein sequences. FastTree infers approximately-maximum-likelihood ...
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#74PhyloSNP_tutorial.docx
Install FastTree and convert hg19.2bit to fasta ... To do so, type wget --timestamping “http://meta.microbesonline.org/fasttree/FastTree.c”.
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#75Important read from Aaron Darling: Not so fast, FastTree
In it he discusses some informatics archaeology he did (digging around in some code) regading the program FastTree which many researchers ...
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#76FastTree 2.1.11 Porting Guide (CentOS 7.6) - Huawei Cloud
HUAWEI CLOUD Help Center presents technical documents to help you quickly get started with HUAWEI CLOUD services.
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#77Models and Algorithms for Genome Evolution
However, a recent study [201] showed that trees estimated by FastTree-2 were almost as accurate as those estimated by RAxML, and that FastTree-2 finished in ...
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#78How to predict multiple labels with ML.NET using regression ...
FastTree ()) .Append(mlContext.Transforms.CopyColumns(outputcolumn: "tripTime", inputcolumn: "Score")); var pipelineForFareAmount = mlContext ...
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#79Algorithms in Bioinformatics: 12th International Workshop, ...
5.3 Results Figure 1 shows the performance of our algorithm, compared with QTree and FastTree. We use the Robinson-Foulds metric, defined as the fraction of ...
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#80Algorithms in Bioinformatics: 11th International Workshop, ...
Running times of the random walk algorithm compared to FastTree. We used the huge.1 alignment from the original FastTree paper [14].
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#81Microbial Taxonomy, Phylogeny and Biodiversity
Under-parameterized and poorly fitting substitution models partly explain the apparent overestimation of bipartition support values done by FastTree.
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#82List of alignment visualization software - Wikipedia
Name Structure prediction tools integrated Can run on Browser Link Alan No No Official website Ale (emacs plugin) No No Official website AliView 2021 No ? Official website
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#83Algorithms and Architectures for Parallel Processing: 17th ...
Up to 22% slowdown reduction is obtained, comparing best case scenario (bwaM+fasttree = 1%), vs. worst (bwaM+fasttree = 23%). been simultaneously executed ...
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#84Write fasta bioconductor
Now I issue a FastTree command to infer a phylogeny over this new alignment with the following paramters: You could write a script in python or some other ...
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#85Diamond freshfit com install
... the dependencies: conda create -n antismash conda activate antismash conda install hmmer2 hmmer diamond fasttree prodigal blast muscle glimmerhmm If you ...
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#86Biopython secondary structure - Email: [email protected]
... structure sug: emboss European molecular biology open software suite sug: fasttree phylogenetic trees from alignments of nucleotide or protein sequences ...
fasttree 在 コバにゃんチャンネル Youtube 的精選貼文
fasttree 在 大象中醫 Youtube 的最佳解答
fasttree 在 大象中醫 Youtube 的精選貼文