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#1IQ-TREE: Efficient phylogenomic software by maximum ...
A fast and effective stochastic algorithm to infer phylogenetic trees by maximum likelihood. IQ-TREE compares favorably to RAxML and PhyML in terms of ...
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#2IQTREE Web Server: Fast and accurate phylogenetic trees ...
For a quick start, take a look at the tutorial for the IQ-TREE web server. Please visit the IQ-TREE homepage for more information or if you want to download ...
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#3IQ-Tree - GitHub
The IQ-TREE software was created as the successor of IQPNNI and TREE-PUZZLE (thus the name IQ-TREE). IQ-TREE was motivated by the rapid accumulation of ...
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#4IQ-TREE 2: New Models and Efficient ... - Oxford Academic
IQ-TREE 2 provides a fast and parallel implementation of the quartet likelihood mapping (Strimmer and von Haeseler 1997) to visualize ...
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#5(PDF) IQ-TREE: A Fast and Effective Stochastic Algorithm for ...
However, the range of obtaining higher likelihoods with IQ-TREE improves to 73.3–97.1%. IQ-TREE is freely available at http://www.cibiv.at/software/iqtree.
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#6IQ-TREE: A Fast and Effective Stochastic Algorithm for ... - NCBI
In conclusion, IQ-TREE is a time and search efficient ML-tree reconstruction program. It complements the collection of available ML-programs and ...
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#7IQ-TREE - bio.tools
Very efficient phylogenetic software for reconstructing maximum-likelihood trees and assessing branch supports with the ultrafast bootstrap approximation.
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#8Debian -- Details of package iqtree in sid
efficient phylogenetic software by maximum likelihood. IQ-TREE is a very efficient maximum likelihood phylogenetic software with following key features ...
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#9IQ-TREE - UFRC Help and Documentation
IQ-Tree is a very efficient maximum likelihood phylogenetic software. Required Modules. Parallel (MPI). gcc; openmpi; iq-tree ...
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#10IQ-TREE - Google Groups
Questions, feedback, feature request and bug report for IQ-TREE phylogenomic software http://www.iqtree.org. To report bug, please start the title with ...
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#11Galaxy | Europe
Javascript Required for Galaxy. The Galaxy analysis interface requires a browser with Javascript enabled. Please enable Javascript and refresh this page.
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#12IQ-Tree-Teaching - Research Computing Center Wiki
Category. Bioinformatics. Program On. Teaching. Version. 1.6.12. Author / Distributor. Please see http://www.iqtree.org/. Description.
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#13iqtree - Galaxy | Tool Shed
Select a revision to inspect and download versions of Galaxy utilities from this repository. Repository iqtree. Name: iqtree. Owner: iuc. Synopsis: ...
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#14IQ-TREE - Siobhon Egan
IQ-TREE · Efficient search algorithm: Fast and effective stochastic algorithm to reconstruct phylogenetic trees by maximum likelihood. · Ultrafast bootstrap: An ...
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#15bio-iqtree | RubyGems.org | Ruby 社群Gem 套件管理平台
bio-iqtree 0.1.2. Phylogenetic analysis using IQ-Tree via BioRuby. 版本列表: 0.1.2 - August 20, 2019 (8.5 KB). 顯示所有版本（共3） ...
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#16read.iqtree in treeio: Base Classes and Functions for ... - Rdrr.io
iqtree : read.iqtree. In treeio: Base Classes and Functions for Phylogenetic Tree Input and Output. Description Usage Arguments Value Author(s). View source: ...
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#17Image Layer Details - hurwitzlab/iqtree:1.6.12 - Docker Hub
/bin/sh -c wget -q https://github.com/Cibiv/IQ-TREE/releases/download/v1.6.12/iqtree-1.6.12-Linux.tar.gz. 3.35 MB. 10. CMD ["iqtree"]. 0 B. Vulnerabilities.
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#18IQ-TREE的使用- 超快速用极大似然法构建进化树 - 简书
iqtree -s example.phy. 其中 -s 参数跟的是输入的多序列比对结果。运行这个命令会产生两个输出文件 example.phy.iqtree 记录相对具体的进化树构建 ...
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#19man iqtree (1): efficient phylogenetic software by maximum ...
man iqtree (1): IQ-TREE version 1.4.2 for Linux 64-bit built Jun 29 2016 Copyright © 2011-2015 Nguyen Lam Tung, Olga Chernomor, Arndt von Haeseler and Bui ...
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#20MUSCLE、IQtree 软件及使用简介_sinat_41621566的博客
本文以4 个兰科物种的252 个NB-ARC domian 蛋白序列信息为数据集，介绍MUSCLE、IQtree 的使用，最后构建出包含252 个蛋白的无根进化树。
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#21IQ-TREE – MetaCentrum
IQ-TREE automatically performs checkpointing to resume an interrupted analysis. Availability. Available modules: iqtree-1.6.12 iqtree-1.6.8 ...
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#22Files :: Anaconda.org
Type Size Name Uploaded conda 6.4 MB | osx‑64/iqtree‑2.1.4_beta‑h4de6764_0.tar.bz2 4 months and 5 days ago conda 6.4 MB | linux‑64/iqtree‑2.1.4_beta‑hdcc8f71_0.tar.bz2 4 months and 5 days ago conda 6.5 MB | osx‑64/iqtree‑2.1.2‑h31d8819_0.tar.bz2 6 months and 28 days ago
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#24Iqtree manual 1.0 - UserManual.wiki
IQ-TREE version 1.0 (July 2014) Fast phylogenetic inference and ultrafast bootstrap analysis by maximum likelihood. User Manual and Tutorial Please read ...
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#25iqtree - efficient phylogenetic software by maximum likelihood
iqtree - efficient phylogenetic software by maximum likelihood. SYNOPSIS. iqtree -s <alignment> [OPTIONS]. DESCRIPTION. IQ-TREE version 1.3.11.1 for Linux ...
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#26iqtree-software [ILRI Research Computing]
Notes from the sysadmin during installation: $ wget https://github.com/Cibiv/IQ-TREE/releases/download/v1.6.12/iqtree-1.6.12-Linux.tar.gz ...
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#27Running IQ-Tree — faircloth-lab e4a8853 documentation
IQ-Tree is a program to infer ML trees from multiple sequence alignment and to perform analyses of those (and other) trees. We can analyze data in lots of ...
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#28An investigation of irreproducibility in maximum likelihood ...
iqtree –runs 1 -nt 10 -st DNA -seed 369284957 -me 0.0001 -s dna.fasta -m GTR + G4 + F -bb 1000 -pre iqtree_dna_Run2.
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#29augur tree - Nextstrain's documentation!
Named Arguments¶ · --alignment, -a. alignment in fasta or VCF format · --method. Possible choices: fasttree, raxml, iqtree · --output, -o. file name to write tree ...
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#30iqtree的微博_微博
我觉得没有人不爱吃土豆的吧！ 一颗土豆大卸八块埋土里等啊等， 每一块都能结出好多好多小土豆！ 每颗小土豆又能做成土豆烧排骨，酸辣土豆粉，土豆泥、土豆薯片…
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#31How to use IQ-TREE — PDC software documentation
Submitting a IQ-TREE job on Tegner¶. A script for running MPI version of iqtree on Tegner called iqtree_mpi_run.sh is shown below. #!/bin/bash.
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#32harrietr : An R package for various phylogenetic and ...
In particular, if the tree was generated when calculating node support by both ultrafast bootstrap and SH approximate likelihood ratio test, IQTREE writes the ...
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#33RRID:SCR_017254 - SciCrunch | Research Resource Resolver
URL: http://www.iqtree.org/. Proper Citation: IQ-TREE (RRID:SCR_017254). Description: Software tool as stochastic algorithm for estimating maximum ...
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#34Part 5: Testing phylogenies
Let's try to compute the chi2 test for a small 18S dataset. For our purpose we will use IQ-TREE. Open a new terminal and start the IQ-TREE analysis. iqtree -s ...
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#35Iqtree - Biostars
Showing top results for tag: iqtree • reset. 0. votes. 5. replies. 257. views. group maximum likelihood's trees together · iqtree ML phylogeny raxml.
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#36IQ-TREE 2: New Models and Efficient ... - ANU Open Research
IQ-TREE (http://www.iqtree.org, last accessed February 6, 2020) is a user-friendly and widely used software package for phylogenetic inference using maximum ...
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#38Error on iqtree step - PhyloPhlAn - The bioBakery help forum
I successfully run the script all the way through generating the output_tol/bins_concatenated.aln. At the last step in iqtree, I receive the ...
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#39IQ TREE on XSEDE - CIPRES
IQ TREE on XSEDE. IQ-TREE was designed to address “deep phylogenetic” questions in the tree of life. Here we offer IQ-TREE on XSEDE resources, ...
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#40Software – VEME 2020 - KU Leuven
IQ-Tree v1.6.5 (http://www.iqtree.org/#download) Alistat (https://github.com/thomaskf/AliStat/) MEGA X (http://www.megasoftware.net/)
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#41W-IQ-TREE: a fast online phylogenetic tool for maximum ...
All computations are conducted on a dedicated computer cluster and the users receive the results via URL or email. W-IQ-TREE is available at http://iqtree.cibiv ...
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#42How To Install "iqtree" Package on Ubuntu - ZoomAdmin.com
How to install iqtree ubuntu package on Ubuntu 20.04/Ubuntu 18.04/Ubuntu 19.04/Ubuntu 16.04 - Server Hosting Control Panel - Manage Your Servers, ...
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#43IQ-TREE - ACENET
Description: A fast and effective stochastic algorithm to infer phylogenetic trees by maximum likelihood. Modulefile: iqtree; Documentation ...
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#44IQTree vs RAxML for phylogenetic tree construction - Bits and ...
iqtree -omp -s alignment.fas -nt 4 -m TEST -bb 1000 `. The results look promising with tree topology, branch length, and support values ...
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#45Package Recipe 'iqtree' — Bioconda documentation
recipe iqtree. Efficient phylogenomic software by maximum likelihood. Homepage. http://www.iqtree.org/. Developer docs. https://github.com/iqtree/iqtree2.
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#46Iqtree2：新模型高效构建系统发育树 - 知乎专栏
iqtree [-s ALIGNMENT] [-p PARTITION] [-m MODEL] [-t TREE] ... -s：序列比对文件（支持多个文件逗号隔开，或者包含比对文件的文件夹），可选PHYLIP ...
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#47Torsten Seemann on Twitter: "@bq_minh I use iqtree in my ...
For a grant proposal I'm gathering information on software/pipelines that rely on or use IQ-TREE. I'm currently aware of QIIME, Mesquite, ...
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#48IQ-TREE 2: New Models and Efficient Methods for ... - Meta.org
IQ-TREE (http://www.iqtree.org, last accessed February 6, 2020) is a user-friendly and widely used software package for phylogenetic ...
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#49How to find a best fit model using IQ-TREE? - Bioinformatics ...
iqtree -s aligned_seqs.fasta -m <model_name> Here, -m refers to the model name such as TIM2+I+G, JC, TPM, WAG, and so on.
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#50网红进化树软件iqtree升级啦! - 云生物
自2013年推出以来，iqtree以其快速精准的建树和全面的功能在竞争激烈的系统发育树（phylogenetics）领域快速蹿红，并广受好评，目前砍下谷歌学术4471次引用。
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#51Ebola virus phylogenetic analysis protocol - Artic Network
We will infer a phylogenetic tree using maximum likelihood (ML) with iqTree. This will use the default nucleotide model (HKY with gamma ...
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#52How to Install iqtree in Ubuntu 18.04 - HowToInstall
Install iqtree by entering the following commands in the terminal: sudo apt update sudo apt install iqtree. Description: efficient phylogenetic software by ...
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#53IQTree： ModelFinder 进化树构建最适模型查找_哔哩哔哩
活动作品IQTree： ModelFinder 进化树构建最适模型查找. 2172播放 · 总弹幕数12020-10-06 20:05:14. 主人，未安装Flash插件，暂时无法观看视频，您可以…
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#54biocontainers/iqtree - Quay.io
biocontainers / iqtree ... No builds have been run for this repository. Description. "efficient phylogenomic software by maximum likelihood ...
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#55新一代建树工具IQ-Tree介绍 - 360doc个人图书馆
本文为大家推介一款近年来悄然兴起的最大似然法进化树构建软件——IQTREE。自2014年11月问世以来，截止2018年6月13日，IQTREE已收获了778次引用（谷歌 ...
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#56BioHPC Cloud: User Guide - CBSU
Link: http://www.iqtree.org. Notes: #set environment. export LD_LIBRARY_PATH=/usr/local/gcc-7.3.0/lib64:/usr/local/gcc-7.3.0/lib export ...
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#57IQ-TREE: Phylogenomic inference software - phylobabble
... this here: We created and are actively developing the IQ-TREE open-source software for phylogenomic inference at http://www.iqtree.org.
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#58New IQ-TREE-PoMo manuscript! - synergy
“Polymorphism-aware species trees with advanced mutation models, bootstrap and rate heterogeneity” by Dominik Schrempf, Bui Quang Minh, ...
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#59IQ-TREE的使用- 超快速用极大似然法构建进化树 - 快资讯
如果你赶时间，那么直接翻到最后。 简单构建进化树iqtree -s example.phy. 其中-s参数跟的是输入的多序列比对结果。运行这个命令 ...
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#60Analysis workflow for IQ-TREE 2 paper - bioRxiv
iqtree -s alignment.phy -T 4 --prefix NONREV -m NONREV. This section benchmarks the LG4X model implementation in PhyML-mixtures, ...
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#61Dating - iqtree/iqtree2 Wiki
Dating - iqtree/iqtree2 Wiki. layout: userdoc title: "Phylogenetic Dating" author: AUTHOR date: DATE docid: 7 icon: info-circle doctype: tutorial ...
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#62IQTREE(1) - Linux man page online | User commands
iqtree (1) - Linux man page. Efficient phylogenetic software by maximum likelihood. Online manual. Command line arguments, usage. Ubuntu, Debian, Mint, ….
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#63IQ-TREE for Ultra-Large Genomic Data - Chan Zuckerberg ...
This project is to improve the speed and scalability of the IQ-TREE software for phylogenetic inference from ultra-large genomic data.
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#64Applications/iqtree - HPC
Application Details. Description: Allows maximum likelihood analysis of large phylogenetic data. IQ-TREE explores the tree space efficiently ...
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#65IQTree - Računalni klaster Isabella - Srce
Na klasteru je dostupan program IQTree - mpi verzija 2.1.2. prevedena koristeći Intel 2019 i openmpi 3.1 prevoditelje.
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#66IQ-TREE 2.1.2 - apolo-docs 0.1 documentation
Enter to the extracted folder. cd icu-release-68-1/iqtree-2.1.2-Linux module load gcc/7.4.0 · Continue with the following steps: sudo mkdir -p /share/apps/ ...
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#67Phylogenomic inference with IQ-TREE - Evolution and ...
6. Tree topology tests. 7. Concordance factors. 8. Identifying most influential genes http://www.iqtree.org/workshop/ck2019 ...
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#68GH53_iqtree_hgt.iqtree - Edmond
additional4> GH53 > Search results > GH53_iqtree_hgt.iqtree. Download file. Previous item Next item. GH53_iqtree_hgt.iqtree. Information.
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#69AUR (en) - iqtree - Arch Linux
Package Base: iqtree. Description: Efficient phylogenomic software by maximum likelihood; multicore version (OMP).
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#70What is the best method to estimate a phylogenetic tree from a ...
There are many phylogenetics programs that claim to be able to analyse datasets like this (e.g. RAxML, ExaML, IQtree, FastTree, PhyML etc).
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#71IQTree - 인코덤, 생물정보 전문위키
IQTree #. 동기 #. 생물의 진화 과정의 유연 관계에 대한 즉, 계통 발생학적 관계를 밝히기 위해서는 근연종과의 뉴클레오타이드 혹은 단백질 서열에 ...
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#73Robertkochia sediminum sp. nov., isolated from coastal ...
2010) with JTT + CAT parameters and IQTree (Trifinopoulos et al. 2016) with the LG + F + G4 model and 1000 bootstrap replicates on the basis ...
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#74Ciliary photoreceptors in sea urchin larvae indicate pan ...
The ML tree was reconstructed using iqtree [84], and nodal support was estimated using ultrafast bootstrap [85] (1000 replicates) and the ...
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#75Leaf spot of Hosta ventricosa caused by Fusarium oxysporum ...
In IQTree ver.1.6.8, the alternative model of GTR + F + I + G4 was adopted, 1,000 iteration guidance methods were used, ...
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#76Dta vs gcf
... Comcast is in the midst of rearranging things Mar 11, 2021 · Finally, you can combine gCF and sCF within a single run: iqtree -t concat. ay in 2020.
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#77Compilation database cmake
CMake (DirectoryPath, CMakeSettings) Alias from Cake. make -j4 The compiled iqtree binary will automatically choose the proper computational kernel for the ...
iqtree 在 コバにゃんチャンネル Youtube 的精選貼文
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