雖然這篇interproscan results鄉民發文沒有被收入到精華區：在interproscan results這個話題中，我們另外找到其它相關的精選爆讚文章
[爆卦]interproscan results是什麼？優點缺點精華區懶人包
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#1Results - InterPro
Your InterProScan search results are shown below. ... Alternatively, you can import the results of an InterProScan run (in JSON format) into this page in ...
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#2Output formats - InterProScan documentation
Output formats¶ · TSV: A simple tab-delimited file format · XML: The InterProScan XML format (XSD available here). · JSON: Full output of results in JSON format ...
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#3Do you know some script or program to plot the results from ...
Hi there, I already have finished the annotation of the genome what I am working. I annotated with BLASP and Interproscan, and as output, I asked to ...
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#4InterProScan Annotation - Blast2GO
Load InterProScan Results. General. The functionality of InterPro annotations in Blast2GO allows to retrieved domain/motif ...
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#5InterProScan 5: genome-scale protein function ... - NCBI
Once the search results are obtained, the InterProScan in-memory database is queried to find corresponding InterPro (Hunter et al., 2012) entries (i.e. the ...
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#6visualization of the functional potential of an InterProScan run
Interproscan is a software tool that scans protein sequences against ... IPRStats is a tool for the visualization of Interproscan results.
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#7(PDF) IPRStats: Visualization of the functional potential of an ...
Interproscan is a software tool that scans protein sequences against ... IPRStats is a tool for the visualization of Interproscan results.
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#8InterProScan Annotation - OmicsBox User Manual
Merge InterProScan GOs to Annotation. Add GO terms obtained through motifs/domains to the current annotations. Remove InterProScan. Delete InterProScan results ...
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#9User interface - INGA
In recent InterProScan verisions MobiDB-lite is activated by default. ... The entries endpoint returns the INGA results for all input sequences.
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#10Introducing the new interpro website - GitHub Pages
Ability to view InterProscan results within the website. As with the previous version of the InterPro website, InterProScan sequence ...
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#11InterProScan ([email protected]) - PNAS
InterProScan ([email protected]). InterProScan Results. Query Sequence 11N17.1 CRC64 Checksum: 370B0B44B4D9631B Length: 1644 aa.
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#12ebi-pf-team/interproscan - GitHub
Sequences are submitted in FASTA format. Matches are then calculated against all of the required member database's signatures and the results are then output in ...
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#13Interproscan results - Figshare
This work was funded through the Research and Conference Grants Administration System (RCGAS) of The University of Hong Kong's Small Project ...
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#14Template query: InterproScan results for specific organism.
Oops! https://phytozome-next.jgi.doe.gov/phytomine/service/ is incorrect. Hide. Hide. Hide.
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#15Interproscan Results (Unigene) | Bioz | Ratings For Life ...
Interproscan Results, supplied by Unigene, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations.
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#16InterProScan | Geneious
InterProScan is a tool to automatically annotate proteins with families and ... and then maps the search results to entries in the InterPro database.
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#17MacVector 18.1 and the new InterProScan functional domain ...
MacVector will submit your protein sequence to an InterProScan search and allows you to permanently annotate results directly back to your ...
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#18Using InterProScan like a pro. Predicting protein domain(s ...
... based on InterProScan's domain prediction results, and merged the data with additional metadata obtained with the EB-eye REST service.
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#19[News] InterProScan results uploaded | LiceBase
Results from a run of InterProScan5 have been uploaded to LiceBase. InterProScan was run on the protein sequences for all predicted Ensembl ...
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#20Using BLAST2GO and InterproScan to generate GO ... - CBSU
In this exercise, we will use BLAST2GO and/or InterProScan command line tool to ... InterProScan results from nucleotide sequences will be rejected by.
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#21InterProScan FAQ file - FTP Directory Listing
InterProScan implements additional filtering for some of the databases. This is detailed in the README, in the "Results ...
於ftp
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#22Search genome's interproscan results for given text
Enter aligned charges or sequences : Enter a multiple sequence alignment of charges or amino acid residues, one line per sequence. eg. ----- ...
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#23Predicting function of protein using Interpro database and ...
InterProScan enables clients to present their own groupings to the pursuit calculations and preparing from InterPro and its part databases. They can get results ...
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#24Load InterProScan results - Galaxy | Tool Shed
InterProScan results : · Load GO annotation to the database: · InterProScan parameters used to produce the results: · Run this only after the following dataset is ...
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#25Class 3 Slides: Annotation — BICH464 - Center for Phage ...
InterProScan ; BlastP agaisnt Canonical Phage DB; BlastP against UniRef90 ... Look at BLAST results, common to see six homologs of the same protein with 4 ...
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#26InterProScan Results
InterProScan http://www.ebi.ac.uk/cgi-bin/iprscan/iprscan?tool=iprscan&jobid=iprs... 1 de 1. 13/03/2008 11:41. InterProScan Results. Table View. Raw Output.
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#27InterProScan - Docs CSC
InterProScan. Description. InterProScan is a tool that compares protein or nucleotide sequence against a set of protein signature databases. The results ...
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#28Java GUI for INterProScan (JIPS) Documentation - Viral ...
Results are displayed in an easy-to-use tabular format. JIPS also contains tools to assist with ortholog-based comparative studies of protein signatures.
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#29Result of InterProScan for pFN21AB8990
hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine ...
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#30Genome, Functional Gene Annotation, and Nuclear ... - PLOS
(C) Results distribution after implementation of InterProScan results. Before, Total number of added GO terms after Blast2GO annotation; after, Total number ...
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#31wf_myExperiment_229_abstract...
Run InterProScan using a nucleotide sequence as input. ... InterProScan result in tab delimited plain text format. application/xml InterProScan result in ...
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#32GoPipe:+Streamlined+Gene+Ontology+Annotation+for+Batch ...
GoPipe is a standalone package that integrates BLAST and InterProScan results to obtain Gene Ontology annotation with built-in statistical ...
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#33IPRStats - bio.tools
A tool for the visualization of Interproscan results. Interproscan results are parsed from the Interproscan XML or EBIXML file into an SQLite or MySQL ...
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#34Interproscan results parsed into a PGDB - Pathway Tools Q&A ...
Is there a preferred way to parse in interproscan results into a PGDB? I ran all of my bug's proteins against a local installation of ...
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#35Workflows for Rapid Functional Annotation of Diverse ... - MDPI
We report a well-defined workflow for rapid functional annotation of ... GOanna and InterProScan results for arthropod genomes selected for ...
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#36Using InterProScan like a pro - Lotus Base
Using InterProScan like a pro ... protein-specific data from a MySQL database built based on InterProScan's domain prediction results, ...
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#37interproscan - issue #16 - Google Code
My guess is that your sequences are a result of a ORF prediction tool, is that correct? Unfortunately InterProScan doesn't print out a ...
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#38Protocol for HSDFinder: Identifying, annotating, categorizing ...
The second input document of InterProScan results was designated as 13 columns (Table 2). To create a heatmap of the HSDs under pathway ...
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#39Genome annotation with Funannotate - Galaxy Training Network
EggNOG Mapper; InterProScan. Submission to NCBI; Integrating structural ... For best results, the sequence should be soft-masked beforehand.
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#40Importing GhostKOALA/KEGG annotations into anvi'o - Meren ...
The KEGG parser script also has the option to combine your GhostKOALA results with interproscan. If you want to incorporate both annotations ...
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#41InterPro - Wikipedia
These are available as position-specific score matrices (PSSMs) for fast identification of conserved domains in protein sequences via RPS-BLAST. HAMAP: Stands ...
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#42Read InterProScan output in the gff format, select sequence...
read InterProScan result, download and add InterPro Entry Types information, extract from relevant columns and add names metadata and ...
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#43Java GUI for InterProScan (JIPS): A tool to help process ...
Results are displayed in an easy-to-use tabular format. JIPS also contains tools to assist with ortholog-based comparative studies of protein ...
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#44InterProScan Plugin for Geneious | Michael R. Thon
This plugin submits protein sequences to the InterProScan server at EBI, and then parses the results, creating annotations on the proteins.
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#45Protein domain annotation - Institute of Bioinformatics WWU ...
The detected domains refer to existing proteins which are inside the protein predictions and to their function. Results. Interproscan output ...
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#46OmicsBox User Manual
Blast, InterProScan, GO Mapping, Functional Annotation, ... Show InterProScan Result: Revise the InterProScan results in detail: databases, ...
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#47Download Workflow - myExperiment
Perform an InterProScan analysis of a protein sequence using the EBI's ... InterProScan result in tab delimited plain text format. application/xml ...
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#48VMD: a community annotation database for oomycetes and ...
Functional annotation of the gene models is based on results from BlastX and InterProScan screens. From the InterProScan results, we could assign putative ...
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#49InterProScan - My Biosoftware – Bioinformatics Softwares Blog
Tag: InterProScan. InterProScan 5.39-77.0 – Protein Domains Identifier ... IPRStats is a tool for the visualization of Interproscan results.
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#50InterProScan - GO Wiki
InterProScan is a piece of software which scans a range of protein ... you will get your results in a graphical, tabular and XML format; ...
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#51InterProScan - URGI -INRA
InterProScan. InterProScan. Version: 4.6; Editor: EBI ... Thus, for best results, search strategies should ideally combine all of them.
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#52InterProScan 5: genome-scale protein function classification
InterProScan is freely available for download from the EMBl-EBI FTP ... annotations and visualizing sequence analysis results through one ...
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#53Results 5 - MDWiki - Molecular Dynamics Group
InterPro: IPR005289 MG442 This is a GTP binding domain. This was found in many different families including Ras GTPase superfamily, ...
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#54GRS - Genome Report System - URGI
Domain/Motif (Interproscan results). Analysis, Domains, Begin, End, Length, Gene Ontology ... Broad institute inra Genome Report System - copyright INRA 2011.
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#55Bioinformatics-for-Dummies-2nd-Ed - Passei Direto
Interpreting InterProScan results Because InterProScan returns a large amount of information, interpreting its results correctly is something of an art form ...
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#56InterProscan 输出格式 - 简书
InterProscan 是一个比较强大的核酸/蛋白序列注释程序。 ... repeat profile) Start location Stop location Score - is the e-value (or score) of ...
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#57MAKER Tutorial for WGS Assembly and Annotation Winter ...
As a result ab initio gene predictors generally perform very poorly on emerging genomes. MAKER's performance on the S. mediterranea emerging ...
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#58Applied Bioinformatics - ppt download - SlidePlayer
Returns all results for your analysis ... 58 InterProScan Results ... Boxes refer to a record in InterPro database The IPR… link summarizes the results.
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#59Novel open reading frames in human accelerated regions and ...
Past work has suggested that SCZ may be the result of ... InterProScan was used to identify descriptive GO terms for the nORFs used in this ...
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#60Rhee-Mutwil-2014.pdf
[20] and InterProScan [21]. ... Add the result to gold standard data ... (D) To integrate results from the different methods, gold standard data are used to ...
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#61Snakemake hub - Free Web Hosting - Your Website need to ...
... pull, update) Before you can share the results of your work by pushing your changes to the upstream, ... Continue reading InterProScan and Snakemake.
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#62InterProScan的三种使用方法 - 陈连福的生信博客
Interproscan 整合了一些使用最普及的一些数据库，并应用于功能未知的蛋白进行Interpro注释和GO注释。 以下介绍3中interpro注释的方法：. 一、网页版的 ...
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#63What to Expect from Your Test Results | Oncotype DX GPS(TM)
The results from the Oncotype DX Genomic Prostate Score test can help you and your doctor better understand the likelihood of aggressive disease, which can help ...
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#64Nextflow pipelines
--publish_dir_mode Method used to save pipeline results to output directory. ... such as NCBI BLAST+, DIAMOND, InterProScan, and KEGG. Requirements.
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#65Common workflow language - Ads
559679293Z stderr WorkflowException: Workflow did not return a result. ... prediction with InterProScan Fetched 2021-01-10 06:22:16 GMT - Generating ...
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#66Understanding the Prolaris report
Understanding the Prolaris report · Prolaris ® explains the behavior of the tumor to provide the risk of Disease Specific Mortality (DSM) and metastasis.
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#67Biodata Mining And Visualization: Novel Approaches
Ideally, for comprehensive ab initio sis, all motif databases should be scanned with InterProScan. canning results of InterProScan include in addition to ...
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#68Wilson and Walker's Principles and Techniques of ...
16.5.4 16.5.5 InterProScan InterProScan is a software package that provides ... in providing the user with non-redundant results; redundancy in results is a ...
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#69Genomics and Effectomics of Filamentous Plant Pathogens
A total of 47 out of the 156 predicted effectors expressed in P. betacei had at least one annotation based on InterProScan results.
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#70Comparative Genomics - 第 2 卷 - 第 61 頁 - Google 圖書結果
Input sequences for InterProScan can be copied and pasted into the ... For complete proteomes the InterPro results are also available in the Integr8 ...
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#71Advances in Computational Biology: Proceedings of the 2nd ...
The results of the relationships between Cenicafé annotations and the data ... The name is obtained by Interproscan eg: HYDROXYMETHYLTRANSFERASE pdb Link to ...
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#72interproscan结果分析no IPR是什么意思 - 掘金
interproscan 结果分析no IPR是什么意思技术、学习、经验文章掘金开发者社区搜索结果。掘金是一个帮助开发者成长的社区，interproscan结果分析no IPR是什么意思技术文章 ...
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#73Interim Results - Yahoo Finance
Interim Results for the six months ended 31 October 2017 -OVARIAN CANCER CLINICAL STUDIES SUCCESSFULLY COMPLETED -ACQUISITION ADDS ...
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#74Molecular and Cellular Plant Reproduction
The deduced aminoacid sequences were annotated using InterProScan (Hunter et al., ... The mapping results were quantified to obtain the number of reads from ...
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#75For a Sweet World – Towards Sustainable Sugar Crops
Second, InterProScan 5.0 was used to characterize sugarcane ... RESULTS. Phenotypic. Data. Analysis. Orange rust resistance reactions of the mapping ...
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#76Interim results of EuroNet-PHL-C1 - Conference Archive
Interim results of EuroNet-PHL-C1. Speaker. Judith Landman-Parker. Session. Pediatric HL. Others Talks of this Session. Targeted agents in pediatric HL ...
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#77The iTrace vs. The NIDEK/Marco OPD III | Tracey Technologies
Dynamic skiascopy has a “fatal flaw” — the fact that it has to interpolate results around a 2 mm blind spot in the center of the measurement field.
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#78Patients Resources - Proscan Imaging
... State-of-the-art equipment that allows us to scan you faster and more comfortably; Results delivered quickly to your physician, to reduce your wait and ...
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