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#1Rsubread - Bioconductor
“The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads.” Nucleic Acids Research, 47, ...
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#2R package Rsubread is easier, faster, cheaper and better for
Rsubread is based on the successful Subread suite with the added ease-of-use of the R programming environment, creating a matrix of read counts ...
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#3Rsubread - Bioconductor
Rsubread is a toolbox developed for the analyses of second and third generation sequencing data. It can be used for read mapping, read counting, ...
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#4The R package Rsubread is easier, faster, cheaper and better ...
Rsubread is based on the successful Subread suite with the added ease-of-use of the R programming environment, creating a matrix of read counts ...
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#5Rsubread - Bioconductor Mirror
Subread sequence alignment and counting for R ... Rsubread is a toolbox developed for the analyses of second and third generation sequencing data. It can be used ...
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#6Bioconductor Rsubread - :: Anaconda.org
Alignment, quantification and analysis of RNA sequencing data (including both bulk RNA-seq and scRNA-seq) and DNA sequenicng data (including ATAC-seq, ChIP-seq, ...
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#7Rsubread: Mapping, quantification and variant analysis of ...
Rsubread : Mapping, quantification and variant analysis of sequencing data ... Alignment, quantification and analysis of RNA sequencing data ( ...
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#8RNA-Seq Analysis in R using Rsubread
In most cases, transcriptome mapping (i.e. kallisto or Salmon) is faster, however the RNA-Seq genome aligner Rsubread - when paired with ...
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#9(PDF) The R package Rsubread is easier, faster, cheaper and ...
PDF | We present Rsubread, a Bioconductor software package that provides high-performance alignment and read counting functions for RNA-seq reads.
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#10featureCounts: a general-purpose read summarization function
Search all packages and functions. Rsubread (version 1.22.2). featureCounts: featureCounts: a general-purpose read summarization function. Description.
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#11Rsubread - Bioinformatics
Rsubread is an R tool for RNA-/DNA-seq data mapping, read counting, single-nucleotide polymorphism (SNP), structural variant, and gene fusion detection.
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#12Rsubread - bio.tools
Provides powerful and easy-to-use tools for analyzing next-gen sequencing read data. Includes quality assessment of sequence reads, read alignment, ...
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#13Is rsubread splice-aware? Should I use HISAT2 ... - Biostars
How does it compare to HISAT2? R rna-seq alignment rsubread • 1.1k views. ADD COMMENT • link updated 16 months ago by ATpoint ...
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#14四川棱镜云开源软件镜像站
Index of /ubuntu-ports/pool/universe/r/r-bioc-rsubread/ 四川棱镜云开源软件镜像站，致力于为国内和企业用户提供高质量的开源软件镜像、Linux 镜像 ...
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#15Rsubread - Bioconductor - NJU Mirror
Rsubread : a super fast, sensitive and accurate read aligner for mapping next-generation sequencing reads ... This package performs read mapping, exon junction ...
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#16Data Source - R Graphical Manual
align (Package: Rsubread) : Read mapping for genomic DNA-seq and RNA-seq data via seed-and-vote (Subread and Subjunc).
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#17Keegan Korthauer on Twitter: "The R package Rsubread is ...
The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of... The first steps in the analysis of RNA sequencing ...
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#18The Subread package
These programs were also implemented in Bioconductor R package Rsubread. CHANGELOG AND NEWS. Release 2.0.3, 15 July 2021. Users guide updated.
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#19在R里面使用Rsubread完成组学分析全套流程
你是否害怕linux的黑白命令行操作，是否对去可视化畏畏缩缩，那么你会爱上它：Rsubread这里演示一下传统的RNA-seq数据的表达量分析全流程, ...
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#20Image Layer Details - inutano/rsubread:0.1.1 | Docker Hub
inutano/rsubread:0.1.1. Digest:sha256:052396fffcf707efaa60b35f74772b312521116f49582d00a27576113b529585. OS/ARCH. linux/amd64. Compressed Size. 275.26 MB.
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#21Rsubread should be listed as a required package #60 - GitHub
... the package Rsubread should be listed under import, and add to the Roxygen part as well. Without Rsubread, it causes the code to break during runtime.
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#22biocontainers/bioconductor-rsubread - Quay.io
Bioconductor-Rsubread. Provides powerful and easy-to-use tools for analyzing next-gen sequencing read data. includes quality assessment of sequence reads, ...
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#23RNA-seq Analysis 2:
Build Index. As with all aligners there is a two step process to aligning reads with Rsubread and at least two files are necessary. First an index is needs ...
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#24error in installing Rsubread package - Stack Overflow
Seems like Rsubread is not available for Windows. It needs Mac or Linux. https://support.bioconductor.org/p/77755/.
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#25Assessment of RSubread Using Mock Community Microbiome ...
Assessment of RSubread Using Mock Community Microbiome Data. Nebiyou Kebede1, 2, Howard Fan3, Tyler Faits3, W. Evan Johnson, Ph.D.4.
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#26Subread/Rsubread Users Guide - CiteSeerX
Subread v1.3.5-p5/Rsubread v1.11.10. 1 August 2013. Wei Shi and Yang Liao ... 6.2 A quick start for featureCounts in Bioconductor Rsubread .
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#27Rsubread - Bioconductor - bob入口
此包用于3.9版的Bioconductor;有关稳定的最新发布版本，请参见Rsubread． 子读序列对和R计数. Bioconductor版本:3.9. 二、三代测序数据 ...
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#28[BioC] mapping multi-mapping reads in Rsubread ...
Dear Tom, Sorry, it took longer than I originally thought to add an option to Rsubread to make it output multiple mapping locations for ...
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#29RNA sequence practical - Summer Institutes
What is Rsubread doing? • Alignment of reads to a reference genome. – The first step in many genomics analyses. • RNAseq – can be used to align to splice ...
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#30在R里面使用Rsubread完成组学分析全套流程
你是否害怕linux的黑白命令行操作，是否对去可视化畏畏缩缩，那么你会爱上它：Rsubread. 这里演示一下传统的RNA-seq数据的表达量分析全流程, ...
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#31Details of package r-bioc-rsubread in impish
Links for r-bioc-rsubread · Ubuntu Resources: · Maintainer: · Original Maintainers (usually from Debian): · External Resources: · Similar packages:.
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#32From reads to genes to pathways: differential... | F1000Research
From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline. [version 2; ...
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#33Subread/Rsubread Users Guide - PDF Free Download
2 Contents 1 Introduction 3 2 Preliminaries Citation Download and installation SourceForge Subread package Bioconductor Rsubread package How to get help The ...
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#34Install Rsubread in R - Linux Mint Forums
When I installed Rsubread I had the following error message: Anything is wrong with the Renviron file? biocLite("Rsubread")
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#35在R里面使用Rsubread完成组学分析全套流程 - 腾讯云
这里演示一下传统的RNA-seq数据的表达量分析全流程, 安装Rsubread包后会有自带的测序数据如下： -rw-r--r-- 1 jmzeng admin 25K Nov 9 18:04 ...
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#36differential expression analysis of RNA-Seq experiments ...
From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood ...
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#37How to intall Rsubread, Edge R and limma ... - Super User
the following is from a draft-manuscript. It worked in the past, but a recent update of Rsubread seems to cause problems (see my question on ...
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#39Alternative splicing in seasonal plasticity and the potential for ...
20 小時前 — featureType = exon), which we ran through Rsubread (v2.0.0) in the R statistical environment (v. 4.0.0). featureCounts successfully assigned ...
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#40使用Rsubread和edgeR准概似流程进行RNA-Seq实验差异表达 ...
流程使用来自开源Bioconductor项目的R软件包，覆盖了分析流程的所有步骤，包括read序列比对，数据探索，差异表达分析，可视化和通路分析。使用Rsubread包执行read比对和 ...
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#41Package list: prefix r | Debian Sources
... r-bioc-rhdf5filters · r-bioc-rhdf5lib · r-bioc-rhtslib · r-bioc-rots · r-bioc-rsamtools · r-bioc-rsubread · r-bioc-rtracklayer · r-bioc-rwikipathways ...
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