雖然這篇BSgenome鄉民發文沒有被收入到精華區:在BSgenome這個話題中,我們另外找到其它相關的精選爆讚文章
[爆卦]BSgenome是什麼?優點缺點精華區懶人包
你可能也想看看
搜尋相關網站
-
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#1BSgenome - Bioconductor
Infrastructure shared by all the Biostrings-based genome data packages. ... Citation (from within R, enter citation("BSgenome") ):. Pagès H (2021). BSgenome: ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#2BSgenome
A BSgenome package contains a single object which is the second component of the name. At first, nothing is loaded into memory, which makes it very fast. You ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#3Bioconductor/BSgenome: Software infrastructure for efficient ...
BSgenome is an R/Bioconductor package that provides the software infrastructure for efficient representation of full genomes and their SNPs.
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#4BSgenome - Bioconductor
Infrastructure shared by all the Biostrings-based genome data packages. ... Citation (from within R, enter citation("BSgenome") ):. Pagès H (2019). BSgenome: ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#5BSgenome package - RDocumentation
getSeq methods for BSgenome and XStringSet objects. available.genomes. Find available/installed genomes. bsapply. bsapply. injectSNPs. SNP injection.
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#6BSgenome: Software infrastructure for efficient representation ...
BSgenome : Software infrastructure for efficient representation of full genomes and their SNPs. Infrastructure shared by all the Biostrings-based genome data ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#7Bioconductor Bsgenome.Mmusculus.Ucsc.Mm10
bioconda / packages / bioconductor-bsgenome.mmusculus.ucsc.mm10 1.4.3. 0 · License: Artistic-2.0 · 10654 total downloads · Last upload: 1 month and 20 days ago ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#8Package 'BSgenome'
available.genomes gets the list of BSgenome data packages that are ... A BSgenome data package contains the full genome sequences for a given organism.
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#9Forge a BSgenome data package - Biostars
Hi, between "organism" and "provider" you should write "common_name" instead of "species". However, no idea for the warning message you get ("incomplete ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#10R/BioC序列处理之四:BSgenome简介
先安装BSgenome包(如果没有安装):. library(BiocInstaller); biocLite("BSgenome"). 载入BSgenome包,并查看当前版本提供的BSgenome数据包:.
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#11Get/Validate BSgenome — validBSgenome • ArchR
This option must be one of the following: (i) the name of a valid ArchR-supported genome ("hg38", "hg19", or "mm10"), (ii) the name of a BSgenome package (for ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#12BSgenome - Week Two | Coursera
Learn to use tools from the Bioconductor project to perform analysis of genomic data. This is the fifth course in the Genomic Big Data Specialization from ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#13Extract all data contained in a structure imported from ...
I have extracted particular data of interest from BSgenome library but I am failed to export the data from its structure. Here is the code
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#14Handling genomic data using Bioconductor I: Biostrings and ...
– Biostrings defines containers and provides functions for genome sequence data. – BSgenome and other genome data packages provide full genome sequences for ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#15BSgenome Views v1 - YouTube
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#16kteam / BSgenome.Stuberosum.SGSC.v11 · GitLab - WUR git ...
BSgenome.Stuberosum.SGSC.v11. In view of the draft genome sequence of DM which still had much room for improvement it was decided by Solynta and Plant ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#17BSgenome 构建自己的参考基因组 - 简书
1. 目的 最近在某个分析的时候,需要BSgenome object,然而我的物种不是常见的物种,是自己组装出来的多倍体物种,因此没法用已有的BSgenome参考 ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#18Details of package r-bioc-bsgenome in sid
Package: r-bioc-bsgenome (1.62.0-1 and others) · Links for r-bioc-bsgenome · BioConductor infrastructure for Biostrings-based genome data packages · Other Packages ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#19seed file for forging a BSgenome - General - RStudio ...
Hi all, i am trying to forge a BSgenome by following ... bioconductor.org/packages/devel/bioc/vignettes/BSgenome/inst/doc/BSgenomeForge.pdf.
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#20BSgenome简介_taojiea1014的博客-程序员秘密
一、BSgenome和BSgenome数据包Bioconductor提供了某些物种的全基因组序列数据包,这些数据包是基于Biostrings构建的,称为BSgenome数据包。不同物种的BSgenome数据包都 ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#21Get regions' information from DNA sequence data (bsgenome ...
You can get specific sequences efficiently using the following packages: library(GenomicFeatures) library(Biostrings) library(tidyverse) ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#22r-bsgenome-hsapiens-ncbi-grch38 1.3.1000 — Packages - Guix
r-bsgenome-hsapiens-ncbi-grch38 1.3.1000 Full genome sequences for Homo sapiens (GRCh38). This package provides full genome sequences for Homo sapiens ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#23BSgenome — bioconductor v3.9.0 - Homolog.us
The BSgenome class is a container for storing the full genome sequences of a given organism. BSgenome objects are usually made in advance by a volunteer and ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#24Bioinformatics Data Skills: Reproducible and Robust Research ...
UCSC.mm10") > > # # > This is a BSgenome package, where BS stands for Biostrings, a Bioconductor package that contains classes for storing sequence data and ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#25Bioinformatics and Functional Genomics - 第 361 頁 - Google 圖書結果
biocLite("Biostrings") > library("BSgenome.Hsapiens.UCSC.hg18") # This loads the required packages BSgenome, IRanges > installed.genomes() [1] "BSgenome.
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#26R Programming for Bioinformatics - 第 172 頁 - Google 圖書結果
They rely on infrastructure in the BSgenome package, and all such packages have names that begin with BSgenome. You can find the list of available genomes ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#27Modern Statistics for Modern Biology - 第 43 頁 - Google 圖書結果
The BSgenome package provides access to many genomes, and you can access the names of the data packages that contain the whole genome sequences by typing ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#28Computational Genomics with R - 第 316 頁 - Google 圖書結果
BSgenome are generic Bioconductor containers for genomic sequences. Sequences are extracted from the BSgenome container using the getSeq() function.
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#29RNA-seq Data Analysis: A Practical Approach
The current genome version is contained in the package BSgenome. Hsapiens.UCSC.hg19. The genome consists of several Biostring objects, ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#30Mm9 ucsc
The BSgenome package provides support for genomes. Calculated RNA-seq read counts for each gene: samtools view bam-file put into htseq-count ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#31Ucsc bed file - leasing – solution
GenomicFeatures, BSgenome. Multiple samples/columns are supported, and the data is displayed in UCSC as a compact heatmap. GTF - positions of all data items ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#32Error in install packages object not found
I uninstalled and reinstalled BSgenome and hg19 and hg38 packages. 7, 4. It does not to refer to the kind of package that you import in your Python source ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#33Bioconductor tutorial - Keits — DEVELOPMENT OF IT ...
MGED6 September 3-5, 2003 Aix-en-Provence, France. GenomicFeatures and BSgenome are two widely used packages for genomic data analysis in R Bioconductor.
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#34Biorender phd thesis
... biomaRt BIONET BioPerl Biopython biorender bioRxiv BioSpace birchhomedir BLAST bowtie2-align BRCA bsc BSgenome BUSCO BWA C57BL/6J Car-T CAR T-cell CAS ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#35Mm9 genome - SOFT LINKS
Note This BSgenome data package was made from the following source data files: Mapping sequences to mouse genome (mm9/NCBI37) using Bowtie: (i) command: ...
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?> -
//=++$i?>//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['title'])?>
#36Mcn camphouse portal - Giant Wheel
And greifenstein telefonnummer pch facebook wall bsgenome mm10 extra innings t20 dj flebotrombosis tromboflebitis drag race holeby iain.
//="/exit/".urlencode($keyword)."/".base64url_encode($si['_source']['url'])."/".$_pttarticleid?>//=htmlentities($si['_source']['domain'])?>
bsgenome 在 コバにゃんチャンネル Youtube 的最佳解答
bsgenome 在 大象中醫 Youtube 的最讚貼文
bsgenome 在 大象中醫 Youtube 的最佳解答