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#2TCGA-BRCA - The Cancer Imaging Archive (TCIA) Public ...
The Cancer Genome Atlas Breast Invasive Carcinoma (TCGA-BRCA) data collection is part of a larger effort to build a research community ...
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#3TCGA-BRCA - 資料集平台
The Cancer Genome Atlas Breast Invasive Carcinoma (TCGA-BRCA) data collection is part of a larger effort to build a research community ...
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#4TCIA TCGA-BRCA Citations | Cloud Healthcare API
Radiology Data from The Cancer Genome Atlas Breast Invasive Carcinoma [TCGA-BRCA] collection. The Cancer Imaging Archive.
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#5Characteristics of breast cancer patients in the TCGA-BRCA ...
... TCGA (The Cancer Genome Atlas) BC expression profile (The TCGA-BRCA cohort) [8] and the associated clinical information were downloaded from Genomic Data ...
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#6Comprehensive Molecular Portraits of Human Breast Tumors ...
Comprehensive Molecular Portraits of Human Breast Tumors (BRCA) ... The Cancer Genome Atlas (TCGA) is a comprehensive and coordinated effort to accelerate our ...
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#7NG-CHM TCGA BRCA - Bioinformatics
This page will contain links to Next Generation Clustered Heat Maps (NG-CHM) related to TCGA data for BRCA. NG-CHM are highly interactive, dynamic clustered ...
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#8Data Download Portal - LinkedOmics
OMICS Dataset Link Level Unit Clinical Download Clinical Phenotype Phosphoproteome (Site level) Download phosphosite Expression (CDAP, Log2ratio) Phosphoproteome (Gene level) Download phosphogene Expression (CDAP, Log2ratio)
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#9Analyzing and visualizing TCGA data - Bioconductor
Downstream analysis using gene expression data # TCGA samples from ... require(TCGAbiolinks) CancerProject <- "TCGA-BRCA" DataDirectory <- paste0(".
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#10TCGAbiolinks TCGA-BRCA RNA-seq clinical data - Biostars
Hi Matina,. I would go with the days_to_death and days_to_last_follow_up (for alive patients) for survival analyses. I think stuff that starts with subtype_ ...
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#11Fig. 3 - BMC Bioinformatics
TCGA BRCA multi-omics data exploration with BRCA-Pathway. Visualization of TCGA BRCA with BRCA-Pathway (a) Multi-omics data of patients whose subtypes are ...
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#12TCGA BRCA (Breast Invasive Carcinoma) Pathology Images
TCGA BRCA (Breast Invasive Carcinoma) Pathology Images ... Links to pathology images of breast cancer samples are listed below by TCGA identifier. Images are ...
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#13TCGA BRCA cancer dataset - OpenAIRE Explore
Following the same steps that we used in the previous course we downloaded the TCGA-BRCA using R and Bioconductor and in particular the ...
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#14Analysis of the TCGA BRCA data —Bio-101
The RNAseq data and the clinical information of the breast cancer in TCGA ... The BRCA status was also retrieved from a literature88.
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#15Identification of a six-gene signature associated with tumor ...
Based on the prognostic signature, survival analysis was used on The Cancer Genome Atlas Breast Invasive Carcinoma (TCGA-BRCA) dataset.
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#16TCGA BRCA cancer dataset | Zenodo
Following the same steps that we used in the previous course we downloaded the TCGA-BRCA using R and Bioconductor and in particular the ...
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#17The impact of site-specific digital histology signatures on deep ...
Deep learning (DL) models have been trained on TCGA to predict numerous features ... For breast cancer (BRCA TCGA cohort), all demographic ...
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#18Molecular analysis of TCGA breast cancer histologic types
Finally, we classify TCGA-BRCA into 12 consensus groups based on integrated genomic and histological features. We present a rich, openly ...
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#19Figure S1. RNA-Seq heatmap for top 50 downregulated genes ...
TCGA -BRCA. TNBC. LCN2. OS. 0.6863739. 0.8201269. 0.3077023. 2.185905. TCGA-BRCA. TNBC. LCN2. DSS. 0.7143508. 0.7910776. 0.227982. 2.74497. TCGA-BRCA.
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#20Analysing a Novel RNA-Binding-Protein-Related Prognostic ...
Breast cancer (BRCA) is one of the most common cancers and the leading cause ... (1) BRCA data were downloaded from The Cancer Genome Atlas (TCGA) and the ...
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#21clinBRCA: Clinical data TCGA BRCA in TCGAbiolinks - RDRR.io
Description Format. Description. Clinical data TCGA BRCA. Format. A data frame with 1061 rows and 109 variables.
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#22cBioPortal for Cancer Genomics
Bladder Urothelial Carcinoma (TCGA, PanCancer Atlas). 411 samples ... RAS/RAF alterations in colorectal cancer · BRCA1 and BRCA2 mutations in ovarian cancer ...
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#23Patch-Based Convolutional Neural Networks for TCGA-BRCA ...
A similar data collection of WSIs is The Cancer Genome Atlas Breast Invasive Carcinoma (TCGA-BRCA). There have been some studies on the dataset to connect ...
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#24Tcga Brca Rna Seq Database (Illumina Inc) | Bioz
Tcga Brca Rna Seq Database, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations.
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#25Broad GDAC awg_tcga-brca__2018_06_13 Run Status
Pipeline NotRun InProcess Successful Unsuccess... 1 CopyNumber_Clustering_CNMF 0 1 0 0 2 CopyNumber_Clustering_CNMF_thresholded 0 0 1 0 3 CopyNumber_Gistic2 0 0 1 0
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#26美國癌症基因體圖譜計畫TCGA (The Cancer Genome Atlas)簡介
對於卵巢癌(ovarian cancer)的研究於2011. 年發表3，首次運用新一代技術進行全基因組. 表現序列(exon)定序，發現突變好發於TP53,. BRCA1, BRCA2, CSMD3, FAT3, NF1等基因。
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#27jmzeng1314/TCGA_BRCA - GitHub
首先在UCSC Xena数据库下载TCGA计划的所有BRCA相关数据分析结果来进行下游挖掘。 ... 我这里选择的是TCGA Breast Cancer (BRCA) (30 datasets) 而不是GDC TCGA Breast ...
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#28TCGA - Breast cancer (BRCA) - Betastasis
TCGA - Breast cancer (BRCA). Gene-level views. Gene expression box plot · Kaplan-Meier survival plot. Copy number tracks.
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#29Integrative Analysis of DNA Methylation and Gene Expression ...
... identified using the Cancer Genome Atlas (TCGA) BRCA data set. We screened for BRCA-differential methylation by comparing methylation ...
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#3033 TCGA Cancer Projects Summary (Pan-Can 33) - UCSC ...
Database: hg38 Primary Table: BRCA Data last updated: 2019-05-03. Big Bed File: /gbdb/hg38/gdcCancer/BRCA.bb ... project_id, TCGA-BRCA, TCGA Project id.
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#31TCGA-BRCA | bioCADDIE Data Discovery Index
landingpage: https://wiki.cancerimagingarchive.net/display/Public/TCGA-BRCA. Disease. name: cancer. Anatomical Part. name: Breast. Data Acquisition. name:.
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#32Mining and analysis of genomic and epigenomic data (TCGA ...
data in biomedical research: NGS, TCGA, downloading and ... The Cancer Genome Atlas (TCGA) ... project: available cancer types such as TCGA-BRCA or.
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#33A Figure S1. TCGA BRCA sample EMT score and subtype ...
TCGA BRCA tumor samples. EMT score. VIM-CDH1. Mean+std. 3.9059. Mean-std. -0.7621. A. 157 Mesenchymal samples. 143 Epithelial samples.
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#34TCGA-BRCA - Research Square
2, TCGA-BH-A0H5, TCGA-BH-A0H5-01A, Transcriptome Profiling, Gene Expression Quantification, TCGA-BRCA, Primary Tumor. 3, TCGA-BH-A0H5, TCGA-BH-A0H5-11A ...
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#351 AKT1low quiescent cancer cells promote solid tumor growth ...
contains the clinical information for the 1002 TCGA BRCA samples with whole exome sequencing data. Patient data from three additional cases of primary ...
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#36survey and evaluation of Web-based tools/databases for ...
The Cancer Genome Atlas (TCGA) is a publicly funded project that aims to ... Project ID, Project ID which sample/case belongs to, TCGA-BRCA ...
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#37TCGA.zip - Figshare
Gene expression data set, originally acquired in the scope of the TCGA-BRCA program. We downloaded raw expression counts of primary tumor ...
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#38Matched tumor/normal pairs--a use case for the ...
Now, we have two data frames describing the normal- and tumor-derived TCGA-BRCA gene expression files. Note that I asked the GDC to provide ...
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#39Pan-cancer analysis reveals unique molecular patterns ...
unique datasets (TCGA-BRCA tumor, TCGA-BRCA normal tissue, METABRIC, and GTEx. 237 breast tissue) were available to us.
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#40Tumor Mutation Burden Forecasts Outcome in Ovarian Cancer ...
In cancers with wild-type BRCA, tumor Nmut was associated with treatment ... In our analysis of TCGA data, BRCA1 mutation-associated ovarian ...
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#41Getting started with TCGAretriever
TCGAretriever helps accessing and downloading TCGA data in R via the ... Relationship between MDM2 and P53, by P53 mutation status in BRCA
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#42JCI - Genomic landscape of metastatic breast cancer identifies ...
Seven SMGs are not significantly mutated in primary breast cancers in The Cancer Genome Atlas (TCGA-BRCA), either within or across subtypes: ...
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#43Overexpression and alternative splicing of NF-YA in breast ...
nf-Y subunits in tumors. We focused on breast carcinomas, and analyzed RnA-Seq datasets of tcGA and 54 BRCA cell lines at gene and isoforms level.
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#44Analysis of TCGA data of differentially expressed EMT‑related ...
PCA, principal components analysis; TCGA, The Cancer. Genome Atlas; BRCA, breast cancer; HNSC, head and neck squamous cell carcinoma; PRAD, ...
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#45TCGA Breast Cancer Data Snapshot
This page provides links to the latest data freeze for the TCGA Breast Cancer ... FINAL.pptx, 05/13/14, Presentation at the TCGA symposium of the BRCA ILC ...
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#46Association of BRCA1 and BRCA2 Mutations With Survival ...
Using multidimensional genomic and clinical data on 316 high-grade serous ovarian cancer patients in The Cancer Genome Atlas (TCGA) project, we ...
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#47bcTCGA - MyWeb
TCGA contains data on tumour samples were assayed on several platforms; this data set compiles results obtained using Agilent mRNA expression microarrays. BRCA1 ...
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#48Potential prognostic biomarker and target for breast cancer
Abbreviations: TCGA, The Cancer Genome Atlas; BRCA, breast invasive adenocarcinoma; GEO, Gene Expression Omnibus; HPA, The Human Protein Atlas; ...
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#49Kaplan-Meier plotter [Breast]
Sources for the databases include GEO, EGA, and TCGA. Primary purpose of the tool is a meta-analysis based discovery and validation of survival biomarkers.
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#50TCGA数据库乳腺癌BRCA挖掘 - 生信自学网
TCGA 数据库乳腺癌BRCA挖掘. 时间:2017-11-01 10:10来源:原创作者:森莘点击: 次. 乳腺癌（breaster cancer）是发生于乳腺上皮或导管上皮的恶性肿瘤。TCGA数据库保存 ...
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#51Tp53 mutation prognosis
BRCA1 /2 and other inherited gene mutations can be passed to you from either parent ... was better in TCGA-BRCA dataset (A); in BRCA-FR and BRCA-KR datasets, ...
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#52ACTBRCA® 貝癌檢™癌症基因檢測
BRCA1 /2基因遺傳資訊. 具有 BRCA 1/2 基因變異，罹患乳癌、卵巢癌、前列腺癌等的比例相對提高。因此，接受BRCA 1/ ...
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#54Xena name meaning
Note that, had the argument -n not been specified, the merged matrix would have been saved as TCGA-BRCA. Geographical distribution of the first name Xena.
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#55Ggpubr font size
It's a dataset known as the Cancer Genome Atlas (TCGA) data is a publicly available ... BRCA RNA-seq data from illuminahiseq_rnaseqv2-RSEM 12 Extensions to ...
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#56Ggarrange legend size - Association ONG EUREKA
BRCA RNA-seq data from illuminahiseq_rnaseqv2-RSEM Center each variable. ... pt) The following codes read in a gene expression data from the TCGA project, ...
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#57BRCA Database | University of Utah
The purpose of this database is to provide information on BRCA1 and BRCA2 gene mutations and their impact on risk of developing breast cancer, ...
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#58Ggarrange legend size
BRCA RNA-seq data from illuminahiseq_rnaseqv2-RSEM Center each variable. ... pt) The following codes read in a gene expression data from the TCGA project, ...
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#59Systematic pan-cancer analysis of KIF23 - Health Reporter
In this study, we utilized the TCGA database and Oncomine to ... breast invasive carcinoma (BRCA), endocervical adenocarcinoma (CESC), ...
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#60Gene getz covid - Savana.cz
The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Project (PCAWG, ... carriers for a mutation on the gene BRCA 1 and 2 that increases the risk for breast, ...
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#61Ggpubr legend size
We will be using as an Example genetic data such the TCGA data. ... BRCA RNA-seq data from illuminahiseq_rnaseqv2-RSEM Please help, the solution does not ...
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#62Smoke pena trapper clone
In BRCA tumour TCGA-BH-A18P (exome), one FOXA1 mutation is in the founding clone, and PIK3R1 and MLL3 mutations are in the subclone.
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#63Mutation dream meaning
ICGC-TCGA DREAM Somatic Mutation Calling Challenge. a mystical ... Having a BRCA gene mutation does mean that your blood relatives are more likely to ...
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#64精準醫療首部曲：BRCA 基因檢測乳癌與卵巢癌防治新契機
而近年研究發現TNBC 或卵巢癌病患若帶有BRCA1/BRCA2 突變基因，則可透過PARP (Poly ADP-ribose polymerase) 抑制劑來治療。 BRCA 突變癌症患者治療契機.
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#65Are splice samples mixed
Additionally, PTPMT1 splice switching was validated in tissue samples of BRCA patients and using the TCGA database. Enter Splice: between now and the end of ...
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#66乳腺癌易感基因（BRCA）和卵巢癌的关联
乳腺癌易感基因1号及2号（简称BRCA1和BRCA2）与乳腺癌（breast cancer）关联的发现为医界提供了更多靶向疗法（targeted treatments）、预防和患者选择的途径。
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#67遺傳性乳癌/卵巢癌BRCA基因檢測
產品介紹. 針對具有家族性乳癌/卵巢癌病史之成員，找出其BRCA1/BRCA2突變的存在，或是找出健康家族成員是否為帶因者，對於乳癌與卵巢癌防治與治療有其臨床意義。
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#68BRCA基因突變型卵巢癌藥物全額資助計劃
為協助有需要的BRCA基因突變型卵巢癌病人，香港遺傳性乳癌家族資料庫推出【BRCA基因突變型卵巢癌藥物全額資助計劃】，資助低收入家庭購買藥物，幫助他們於經濟困難中仍能 ...
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#69Cancer du sein ou de l'ovaire, gène, risque et suivi BRCA
L'âge du cancer du sein est plus précoce lorsque l'on a une mutation BRCA. En moyenne 40 ans pour BRCA1 et 43 ans pour BRCA2.
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