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#1ProtScale - Expasy
ProtScale [Reference / Documentation] allows you to compute and represent the profile produced by any amino acid scale on a selected protein.
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#2ProtScale
ProtScale allows you to compute and represent the profile produced by any amino acid scale on a selected protein. An amino acid scale is defined by a numerical ...
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#3ProtScale - bio.tools
Compute and represent the profile produced by any amino acid scale on a selected protein sequence. The most frequently used scales are the hydrophobicity or ...
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#4ProtScale -- amino acid scale computation tool | HSLS
ProtScale -- amino acid scale computation tool · Compute and represent the profile produced by any amino acid scale on a selected protein. · Choose from a variety ...
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#5ProtScale | Technology Networks
ProtScale allows to compute and represent (in the form of a two-dimensional plot) the profile produced by any amino acid scale on a selected ...
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#6Hydrophilicity plot - Wikipedia
Plot was created using the ExPASy Protscale tool (http://web.expasy.org/protscale/). Amino Acid Hydropathy Scores. Amino Acid, One Letter Code, Hydropathy Score.
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#7Protscale - Amino Acid Scale Representation (Hydrophobicity ...
i need code of protScale in c++ (ProtScale - Amino acid scale representation (Hydrophobicity, other conformational parameters, etc.)) plzzzzz help me .
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#8ProtScale hydrophobicity graph for the Ankrd2 C-terminal ...
Download scientific diagram | ProtScale hydrophobicity graph for the Ankrd2 C-terminal region from amino acids 241 to 333. Arrows designate the peaks with ...
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#9Bio::Tools::Protscale - gists · GitHub
Protscale.pm. package Bio::Tools::Protscale;. use strict;. use warnings;. use base qw(Bio::Root::Root);. use LWP 5.64;. use HTML::TreeBuilder::XPath;.
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#10ProtScale BioCode | BioCodeKB - Learn Bioinformatics
ProtScale is a tool that allows us to compute represent (in the form of a two-dimensional plot) and represent the profile produced by any amino acid scale ...
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#11ExPASy資料庫簡介-蛋白質序列分析與預測
(三)ProtScale. 1. 在Primary structure選擇ProtScale. 2. 貼上欲查詢之氨基酸序列. 3.選擇amino acid scale. 4.按下Submit. 文字方塊: 以此作者為例.
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#13ProtScale | 健康跟著走
ProtScale [Reference / Documentation] allows you to compute and ... ,FindPept can identify peptides that result from unspecific cleavage of proteins .
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#14PRRT2 gene and protein in human: characteristics, evolution ...
The hydrophilicity and hydrophobicity of human PRRT2 protein was analyzed online using the ProtScale program. The results of hydrophobicity ...
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#15Click for larger image - xmlinkhub
Linear B-cell epitopes of CDPK3 protein sequence predicted by ProtScale server (https://web.expasy.org/protscale/), based on percent of accessible residues ...
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#16Locating transmembrane domains in protein sequences - DiVA
ProtScale is a scale based on the free energy of transfer. The amino acid values for these scales are presented in table 4.1. We will develop a system based on ...
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#17Practical Protein Bioinformatics - Computational Systems ...
ProtScale - Graphical representation of a property profile along the protein sequence. EMBOSS Needle - Global alignment of two protein sequences
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#18A novel missense variant in cathepsin C gene leads to PLS in ...
Moreover, ProtParam and Protscale revealed the variant increased the isoelectric point and hydrophilicity of the protein, and the SWISS-MODEL ...
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#19Tutorial section Hydropathy — A window on the evasion of water
http://us.expasy.org/cgi-bin/protscale.pl?1/. Abraham and Leo9. Black and Mould10. Bull and Breese11. Chothia12. Eisenberg et al.3. Fauchere and Pliska13.
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#20Ensembles of Hydrophobicity Scales as Potent Classifiers for ...
... derived from AAindex (Kawashima et al., 2007), the SPLIT 4.0 server (Juretiæ et al., 1993), and ProtScale (Gasteiger et al., 2005).
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#21Table 2 | “In Silico” Characterization of 3-Phytase A ... - Hindawi
Hydrophobicity score in the two reported and revised phytases from A. niger (ProtScale). Minimum and maximum values of accessibility in the two reported and ...
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#22pcDNA3.1(+)-VEGF165载体的构建及表达蛋白特性分析
利用DNAstar软件分析基因序列并翻译成氨基酸序列，再用Ex-PASy protscale和Protean软件分析其疏水特性、蛋白二级结构。经基因测序、酶切鉴定和PCR鉴定 ...
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#23蛋白亲疏水性分析工具
ProtScale 可计算和展示所选蛋白的50多种氨基酸标度（Amino acid scale）的图谱，氨基酸标度是给每种氨基酸指定的数值，比如Molecular weight（分子质量）、Number of codon ...
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#24搜索
officinalis. Bioinformatics analysis was performed using the Protparatam, the ProtScale, and the SOPMA. CobHLH40 had a cDNA length of 2100 bp ...
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#25Bio.SeqUtils.ProtParam module - Biopython
Similar to expasy's ProtScale: http://www.expasy.org/cgi-bin/protscale.pl. isoelectric_point (self)¶. Calculate the isoelectric point.
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#26protscale(蛋白质的疏水性预测)
Expasy的protscale工具可用于蛋白质的疏水性预测. 上一条：PhosphoSitePlus（蛋白质磷酸化位点的数据库). 下一条：COGs.
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#27(B) (A) - MDPI
The hydrophobicity analysis was performed using the ProtScale server and plotted against the amino acid position. The scoring from -2.0 to 2.5 on.
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#28ProtScale
ProtScale : The website is part of the larger ExPASy group of software that does both Hydrophobicity and Chou-Fasman. Secondary Structure predictions. URL:.
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#29hydrophobicity function - RDocumentation
This function calculates the GRAVY hydrophobicity index of an amino acids sequence using one of the 24 scales availables on ExPASy "protscale"
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#30Expert Protein Analysis System - CS@UCF
Predicting Secondary Structures. -Does My Protein Contain A trans-membrane domain ? The easy way: Protscale on Expasy. The state-of-the-art: tmHMMpred ...
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#31轉寄 - 博碩士論文行動網
Then the ProtScale tool to analyze these epitopes of hydrophilic nature. Using B cell epitope and MHC epitope as the way to the proposed vaccine peptide, ...
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#32[R] Help with submitting HTML forms in RCurl
I don't get error: > postForm("http://www.expasy.ch/tools/protscale.html", + "sequence" = "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", ...
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#331-Simple predictions 2-Repeated regions 3-Secondary Struc
The easy way: Protscale on Expasy. The state-of-the-art: tmHMMpred. Cédric Notredame (). protscale: sliding Window Methods. Average. Sliding Window.
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#34ProtScale - Redes de tecnología - La comunidad científica en ...
ProtScale permite calcular y representar en forma de gráfico bidimensional el ... ProtScale se puede utilizar con 50 escalas predefinidas ...
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#35World J Nephrol Urol
445_445delC-PC1 protein. PC1: polycystin 1. Figure 3. Hydrophobicity and helix forming capacity calculation of wild and mutant proteins using ProtScale.
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#36PyMOL Molecular Graphics System / Thread - SourceForge
[PyMOL] Plugin: Protscale color gradients. From: Kristian Rother <k_rother@ya...> - 2004-07-23 10:10:58. Dear PyMOL users, One of our students and i have ...
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#37ExPASy-ProtScale测量氨基酸残基的疏水亲水性，图上怎么看
ExPASy-ProtScale测量氨基酸残基的疏水亲水性，图上怎么看？对于生物大分子这个网站主要功能还有什么？非常感谢虫友们的积极解答分子生物生物化学.
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#38Package 'Peptides' - CRAN
ExPASy-Protscale (http://web.expasy.org/protscale/). – AAIndex Database (http://www.genome.jp/aaindex/). • pK. – Kiraga, J. (2008) Analysis ...
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#39IJBB 47(6) 370-377.pdf
org/tools/protscale.html) and Protparam (http://expasy org/tools/protparam.html)21 were employed. Total 47 parameters that are known to influence structural ...
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#40鼠疫耶尔森菌CAF-1基因的生物信息学分析及抗原表位预测
方法运用ProtScale,TMHMM Server,Signal P 3.0 Server,NetPhos3.0 Server,SOPMA,Swiss-mode和DNAStar等生物信息学软件分析鼠疫耶尔森菌CAF-1基因的氨基酸序列组成、 ...
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#41Background knowledge Outline Physical properties Sequence ...
ProtScale hydrophobicity profile. Eisenberg scale. TMHMM. • TransMembrane Hidden Markov Models. TMHMM output. Interpreting TMHMM. (vs. ProtScale).
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#42searching motifs with structural and biochemical properties
properties like those used in ProtScale (ProtScale, 2002/2003, http://us.expasy.org/cgi-bin/protscale.pl). The structural properties of motifs can be ...
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#43常用蛋白质分析软件介绍（上） - 金斯瑞
ExPASy的ProtScale工具（https://web.expasy.org/protscale/ ）可以预测给定氨基酸序列的疏水性，可以允许用户计算蛋白质的50余种不同属性，并为每一种氨基酸输出相应 ...
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#45WisPacT - solution - 5.4.3
Solution. Please view the sequence "Cartilage Oligomeric Matrix Protein", and repeat the example with this protein. The program is ProtScale.
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#46ProtScale output for user_sequence 3 Hphob. / Kyte - Chegg
Transcribed image text: ProtScale output for user_sequence 3 Hphob. / Kyte & Doolittle 2 1.5 0.5 Η 0.5 -1 1.5. -2 0 100 200 300 40050 600 Position c.
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#47Protein Primary Structure - Gene Infinity
ProtScale allows you to compute and represent the profile produced by any amino acid scale on a selected protein.An amino acid scale is defined by a ...
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#48(DOC) ProtScale bull | Afrin Nayakawadi - Academia.edu
ProtScale User-provided sequence: 10 20 30 40 50 60 MSVSLHHFII SSGFLTSMFP KAVRRAVTAG VFAAPTLMSF LRCGVMASDP PLVANQVVTC 70 80 90 100 110 120 PDKKSTAAVI ...
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#49MATLAB Bioinformatics Tools
You can get the amino acid values from http://cn.expasy.org/cgi-bin/protscale.pl. Use Kyte & Doolittle's values. Create a function that has two inputs, ...
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#50Introduction
Figure 1: Hydrophobicity plot of the human Rhodopsin (AC P08100 at ExPASy), created by means of ExPASy-Service ProtScale. The Window size is 9 and the ...
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#51甘蓝型油菜PDF1基因的生物信息学分析Bioinformatic ... - abc
通过在线软件ProtScale. （http://www.expasy.ch/tools/protscale.html）对. 甘蓝型油菜PDF1 基因进行分析。Kyte＆. Doolittle 计算疏水性，得0分以下表示亲水，0分.
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#52Team:Shenzhen SFLS/Protein Engineering - iGEM 2015
Hydrophobicity scale of p185 her2/neu ECD, predicted by ProtScale, Hphob. / Eisenberg et al. Fig 3.3. Secondary structure and solvent accessibility prediction of ...
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#53In silico Prediction and Experimental Confirmation of B-cell ...
scores obtained by using default settings in the ProtScale tools of the ExPASy server (28). (B) Epitope length-dependent prediction ...
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#54External peptide resources | Isca Biochemicals
ProtScale allows analysis of the profile produced by an amino acid scale on a selected protein. An amino acid scale is a numerical value assigned to each ...
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#55GBCH601 Lecture on Structure Graphics and the Amino Acids
Go to "ExPASy", then "Tools", then "ProtScale". Paste your accession number in the space provided; Confirm that "Hphob.
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#56آنالیز ساختاری آنزیم آسپارتات کیناز ... - پژوهشهای علوم دامی ایران
نتایج بررسی پایگاه های ProtScale و ProtParam نشان داد که آنزیم آسپارتات کیناز در گونه کورینه باکتریوم گلوتامیکوم با شماره دستیابی CAO00530.1 و SJM57548.1 ...
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#574. Predizione di struttura secondaria (+esercitazione gor iv e ...
sono programmi di ultima generazione. ESERCITAZIONE ProtScale. : METODO. COUH E FASMANN. Collegati a Google; cerca “Expasy”; clicca sul primo link: ExPASy: ...
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#58Multi-ProtScale - Luciano A. Abriata, PhD
MultiProtScale: ProtScale on multiple sequences, even on an alignment ... It is inspired by (and is actually an extension of) ProtScale and is written ...
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#59Computational Proteomics - NBPGR
ProtScale. Page 23. ProtScale Output: Page 24. Secondary Structure. Analysis Tools. Page 25. GOR IV A Secondary Structure. Predicting Server. Page 26 ...
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#60Useful Links - Biophysics Lab of Dr. Pan - University of South ...
http://web.expasy.org/protparam/; https://web.expasy.org/protscale/. Sources: http://avantilipids.com (lipids); http://www.
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#61新型冠状病毒3C样蛋白酶结构和功能特征分析 - 微生物学杂志
通过ProtParam、ProtScale、Bioedit服务器对3CL pro 进行一级结构如氨基酸理化 ... ProtScale and Bioedit; the structure such as curling spiral region on the ...
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#62Identification of Antigenic Determinants, Solvent Accessibility ...
Protscale output for user sequence. Hphob. / Hopp & woods. Soore. Figure 2: Hydrophobicity plot of Hopp and Woods.
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#63Hydropathy Plot
Hydropathy plots allow for the visualization of hydrophobicity over the length of a peptide sequence. A hydropathy scale which is based on the hydrophobic and ...
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#64ProtScale output for user_sequence Hphob.' / Kyte & Doolittle ...
ProtScale output for user_sequence Hphob.' / Kyte & Doolittle 14 42 22 .4 16 ).8 J1 1.2 1.4 1.6 40 60 Posltlon 80 100 20. View Full Video.
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#65Lysin - Pneumococcus phage Dp-1 - PAL gene & protein
... Cambridge University Press (1993)</a>)</p> Checksum: i C17F0911B7D46CC1. BLAST, ProtParam · ProtScale · Compute pI/MW · PeptideMass · PeptideCutter.
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#66Proteína LIC10494 de Leptospira interrogans serovar ...
Se realizó un análisis computacional de la estructura primaria de LIC10494 a partir de los servidores BLAST, PROTPARAM, PROTSCALE, DAS, SOSUI, TOPPRED, TMAP,.
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#67Structural and Functional Analysis of Ferritin Heavy Chain ...
Prediction via ProtScale. The protein sequence was input in the FASTA format and the amino acid scale selected was Hphob /Kyte & Doolittle [18] with the ...
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#68请问怎么通过ProtScale 判断疏水区和亲水区？ - 知乎
通过ProtScale分析我得到以下数据，根据正值表示疏水性, 负值表示亲水性, 介于+0.5~-0.5 之间主要为两性…
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#69UISpace - University of Ibadan Institutional Repository
Fourteen of the twenty entries (seventy percent) had more than 30 consecutively negative amino acid residues based on the ProtScale's Kyte and Doolittle ...
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#71ESERCITAZIONE 4
Andare su Protscale ed incollare la sequenza, scegliere la scala di idrofobicità (Kyle &. Doolittle) e lanciare l'analisi.
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#72In silico analysis techniques (bioinformatics) : proteids tools
ProtScale : amino acid scale representation (hydrophobicity, other conformational parameters, etc.) Protein Colourer : tool for coloring your amino acid ...
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#73Analisis Bioinformatika Mutasi N615i Protein N-Methyl-D
2. Analisis profil skala asam amino. (ProtScale). Untuk melihat hidrofobisitas sekuens asam amino protein. NMDAR subunit NR2B normal dan mutan dilakukan ...
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#74Desenvolvimento de um método sorológico para o ... - Descrição
... de hidrofilicidade e flexibilidade obtidos pelo uso do \"software\" ProtScale, acessível no endereço http://au.expasy.org/cgi-bin/protscale.pl, ...
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#75Proteomic Tools Description
ProtScale - amino acid scale representation (Hydrophobicity, other conformational parameters, etc.) RandSeq - random protein sequence generator.
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#76核糖体蛋白S6激酶<i>β</i>1的分子结构和理化性质分析
ProtScale 在线工具预测知，RPS6KB1亲水性最强的位点是第5位的精氨酸，分值为-3.222；疏水性最强的位点是第158位的亮氨酸，分值为2.178。由图2可知， ...
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#77항원결정부위 예측을 위한 통합시스템 개발 - Korea Science
본 연구에서 아미노산 성질들은 ExPASy Protscale을. 이용하여 예측한 후 통합시스템을 구축하였다. 기존 예. 측프로그램인 IEDB Analysis Resource와 우리가 개발한.
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#78A Multi-View Fusion Approach for Protein Crystallization ...
specific scoring matrix (PsePSSM), Protscale, and Discrete Wavelet Transform-Position specific scoring matrix (DWT-PSSM).
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#79Structural modeling of natural citrus products as potential ...
www.expasy.ch/tools/protscale.html. ProtScale. Using the scale Hphob/Kyte and Doolittle, the individual values for the 20 amino acids are:.
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#80생물정보학기반 말라리아 항원부위의 예측 - 한국과학기술정보 ...
확보된 특이 부위를 ProtScale Tool 프로그램을 이용하여 hydrophilicity를 분석하고 진단키트 제작에 사용할 수 있는 epitope를 예측하였다.
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#81Amino Acid Properties - BioFolD
ProtScale at ExPASy. ExPASy webserver plots protein plots based on different scales https://web.expasy.org/protscale/ ...
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#82BarretoTijaroLeidyViviana2012.pdf - Repositorio Institucional ...
Para tal fin se realizó un análisis computacional de la estructura primaria de LIC10494 a partir de los servidores. BLAST, PROTPARAM, PROTSCALE, DAS, SOSUI, ...
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#83آنالیز ساختاری آنزیم آسپارتات کیناز در کورینه باکتریوم به ...
6، ProtScale و ProtParam مورد بررسی قرار گرفت. سپس ساختار سه بعدی پروتئین های مذکور به روش هومولوژی و با استفاده از سرور Swiss-Model مدل سازی شد و ارزیابی ...
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#84蛋白质结构分析一点小心得 - 简书
ExPASy的ProtScale工具（https://web.expasy.org/protscale/ ）可以预测给定氨基酸序列的疏水性，可以允许用户计算蛋白质的50余种不同属性，并为每一 ...
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#85Journal of Bioinformatics and Sequence Analysis
The Protscale program hosted by the Expert Protein Analysis System (ExPASy) (http://web.expasy.org/protscale) was used to identify putative surface-exposed ...
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#86Design of a new multi-epitope vaccine against Brucella based ...
The surface accessibility and hydrophilic regions of proteins were analysed with the ProtScale software and the tertiary structure model of ...
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#87Clustering of conformational IgE epitopes on the major dog ...
... exposure of amino acids as determined by ProtScale bioinformatics tool from the ExPASY server (http://web.expasy.org/protscale/) (Fig.
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#88Novel Japanese encephalitis virus NS1-based vaccine - The ...
JEV NS1 protein sequence was subjected to software of Bepipred and Protscale to forecast its linear B cell epitopes and hydrophobic features, ...
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#89hydrophobicity > BRIC
A. http://www.expasy.org/tools/protscale.html 아미노산 서열을 입력한 후 sumit키를 누르면 계산되어 나옵니다. Protein에 관련된 대부분의 tool은 expasy에서 ...
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#90Molecular Cloning, Characterization and Expression Analysis ...
... and ProtScale at http://web.expasy.org/protscale. ... of CcWap65 was displayed by ProtScale, the scale Kyce and Doolittle.
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#91Raphanus Sativus - Scientific Research Publishing
http://www.expasy.org/cgi-bin/protscale.pl. http://swissmodel.expasy.org. 2.2. BLAST Searching of Raphanus sa tivus EST. and Genomic Da t abases.
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#92T1TAdb Links - CNRS
... PSIPRED: 2D structure prediction of proteins; POLYVIEW-2D: drawing of protein 2D structure diagrams; ProtScale: hydrophobicity plot of proteins.
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#93生体高分子の立体構造とその予測
対応する疎水性指標をプロット。 ・ 前後数残基でスムージング。 http://kr.expasy.org/tools/protscale.html. 予測結果と実際の埋もれ度との比較.
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#94Whole Mitochondrial Genome Analysis in Turkish Patients ...
In the. ExPASy-ProtScale program, p.L234F change caused a decrease in the level of hydrophobicity that could change the flexibility of the.
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#95Strukturvorhersagen bei Proteinen - Chemgapedia
ProtScale Sekundärstrukturvorhersage nach Chou und Fasman. Nach der älteren Methode von Chou und Fasman werden zwei α-helicale Bereiche von Position 8-27 und ...
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#96แปลงชอบน้ำ อ้างอิงและลิงค์ภายนอก - วิกิภาษาไทย
ลิงค์ภายนอก · ExPASy ProtScale · แปลงโปรตีน Hydrophobicity จากรัฐโคโลราโด · แผน Hydropathicity จากโลกแห่งชีวสารสนเทศ.
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#97新型H7N9禽流感病毒NA蛋白胞外区片段的生物信息学分析及其 ...
应用Protscale构建的疏水图谱显示，多肽链第270位的Asp具有最高的分值1.389，疏水性最强，第292位的Pro具有最低的分值-2.978，亲水性最强，整体来看，该基因编码蛋白为 ...
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#98Neph1 and nephrin interaction in the slit diaphragm is an ... - JCI
The extracellular segments of several mouse podocyte proteins were analyzed by hydrophobicity plots using Kyte-Doolittle curves on the ProtScale web site (22); ...
protscale 在 コバにゃんチャンネル Youtube 的精選貼文
protscale 在 大象中醫 Youtube 的最佳解答
protscale 在 大象中醫 Youtube 的最佳貼文