雖然這篇HiC-Pro鄉民發文沒有被收入到精華區：在HiC-Pro這個話題中，我們另外找到其它相關的精選爆讚文章
[爆卦]HiC-Pro是什麼？優點缺點精華區懶人包
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#1HiC-Pro: An optimized and flexible pipeline for Hi-C data ...
HiC -Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to normalized contact maps. It supports the main Hi-C protocols, ...
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#2Welcome to HiC-Pro's documentation!
Welcome to HiC-Pro's documentation!¶. Contents: HiC-Pro Quick Start Guide · What is HiC-Pro ? How to install it ? Annotation Files · How to use it ?
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#3HiC-Pro: an optimized and flexible pipeline ... - Genome Biology
HiC -Pro is a flexible and efficient pipeline for Hi-C data processing. It is freely available under the BSD licence as a collaborative project ...
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#4[工具][Hi-C] HiC-Pro Hi-C数据处理工具 - 知乎专栏
HiC -Pro 是一个很棒的Hi-C数据处理软件，能够直接输出后面可视化需要的矩阵文件和.bed文件，换句话说它就是一个封装的数据处理pipeline。
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#5HiC-Pro: Hi-C数据预处理高效工具
HiC -Pro是一个高效率的Hi-C数据预处理工具，能够应用于dilution Hi-C, in situ Hi-C, DNase Hi-C, Micro-C, capture-C, capture Hi-C 和HiChip 这些 ...
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#6HiC-Pro on HPC
HiC -Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps.
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#7HiC-Pro Pipeline - 3dgenome - GitBook
HiC -Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. It supports the main Hi-C ...
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#9Analysis of Hi-C and capture-C data using HiC-Pro - HemTools
This program provides Hi-C or Capture-C data analysis paired-end samples, split the fastq files and run HiC-Pro. Total input reads is splited to ...
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#10HiC-Pro - bio.tools
HiC -Pro (biotools:hic-pro) ID Verified · OpenEBench ... This tool was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the ...
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#11HiC-Pro: an optimized and flexible pipeline for Hi-C ... - INFONA
HiC -Pro is an optimized and flexible pipeline for processing Hi-C data from raw reads to normalized contact maps. HiC-Pro maps reads, detects valid ligation ...
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#12Hic-Pro安装 - CSDN博客
HiC -Pro的作用是把测序文件输出为标准互作图谱，软件非常灵活，不仅可以处理各种不同建库方式的Hi-C数据，也可以处理capture Hi-C数据。
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#13HiC-Pro: An optimized and flexible pipeline for Hi-C data ...
(2015) Servant et al. Genome Biology. HiC-Pro is an optimized and flexible pipeline for processing Hi-C data from raw reads to normalized contact maps.
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#14最详细的HiC-Pro使用记录及结果解读 - 简书
注意：其中reads名称默认必须是_R1.fastq.gz和_R2.fastq.gz结尾的。 6.运行主程序HiC-Pro前修改config-hicpro.txt文件. 将HiCPro安装目录下的config- ...
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#16HiC Pro error (make: *** No targets. Stop.) even when using ...
Error - Installation - config system not detected. Please (re) install HiC-Pro ! Not sure what this means, given that I thought the program should be ready ...
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#17HiC-tutorial
It will download the bowtie2 index files for human genome hg19. HiC-pro config file¶. The final file will look like this: ### ...
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#19HiC-Pro: an optimized and flexible pipeline for Hi-C ... - scanR
HiC -Pro is an optimized and flexible pipeline for processing Hi-C data from raw reads to normalized contact maps. HiC-Pro maps reads, detects valid ligation ...
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#20HiC-Pro实操-哔哩哔哩
HiC - Pro 实操. 要改变世界的男人. 相关推荐. 查看更多. 第八讲—— HiC - Pro 实操培训. 1201 --. 1:18:00. App. 第八讲—— HiC - Pro 实操培训. 第七讲—— HiC - Pro 理论课.
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#21HiC-Pro quality controls. Quality controls reported by HiC-Pro ...
Download scientific diagram | HiC-Pro quality controls. Quality controls reported by HiC-Pro (IMR90, Dixon et al. data). a Quality control on read alignment ...
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#22HiC-Pro的使用｜ HiC辅助基因组组装（一） - 生信技术
软件安装新版本建议使用目前最新的3.0.0版本（需要root权限） 安装方法如下： 123456789101112# 创建conda环境conda create -y -n hic-pro python=3.7 ...
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#23nf-core/ hic
Note that if the --dnase mode is activated, HiC-Pro will skip the second mapping step. Output directory: results/hicpro/mapping. *bwt2pairs.bam - final BAM file ...
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#26Install and run HiC-Pro-2.10.0 - HMS IT RC O2 - Confluence
1mkdir -p /home/$USER/pub/HiC-Pro-2.10.0/dependencies/rlib/3.4.1 ... 1wget https://github.com/nservant/HiC-Pro/archive/v2.10.0.tar.gz 2tar ...
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#27HiC-Pro:灵活的Hi-C数据处理软件 - 腾讯云
HiC -Pro是一款高效的Hi-C数据分析软件，提供了从原始数据到归一化之后的HI-C图谱构建的完整功能，运行效率高，用法简便。该软件对应的文章链接如下.
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#28HiC-pro安装与使用 - 学术咖
软件安装 #conda 安装软件需要的环境 . ~/miniconda3/bin/activate conda create -y -n hic-pro python=2.7 pysam bx-python numpy scipy samtools ...
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#29Workshop 10: Hi-C - UCLA
Aligning Hi-C library using HiC-Pro, continued. Visualization of data using HiC-Plotter. Day 3: Identification of significant chromatin interactions using.
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#30an optimized and flexible pipeline for Hi-C data processing.
Servant N, Varoquaux N, Lajoie BR, Viara E, Chen CJ, Vert JP, Heard E, Dekker J, Barillot E. HiC-Pro: an optimized and flexible pipeline for Hi-C data ...
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#32HiC-Pro - UFRC Help and Documentation
HiC -Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to normalized contact maps.
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#37HiCPro分析流程及结果解读 - 博客园
1. 可由conda安装2. 首先采用HiCPro自带的digest_genome.py程序获得消化片段的BED文件及chromosomes' size表格文件,需要限制.
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#38HiC-Pro:灵活的Hi-C数据处理软件 - 51CTO博客
HiC -Pro:灵活的Hi-C数据处理软件，欢迎关注”生信修炼手册”!HiC-Pro是一款高效的Hi-C数据分析软件，提供了从原始数据到归一化之后的HI.
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#402014 Day 2 Highlights | HIC PRO | VANS - YouTube
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#41import.HiCPro.full: Compress all Hi-C Pro output data ...
import.HiCPro.full takes output data from HiC-Pro and compresses it. All interactions will be preserved including interchromosomal.
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#43Installing HiC-Pro issues - Bioinformatics Stack Exchange
I could install HiC-Pro using conda when creating a separate environment (which I always do for side-projects), and then pull the conda ...
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#44HiC-Pro: an optimized and flexible pipeline for Hi-C ... - Altmetric
HiC -Pro: an optimized and flexible pipeline for Hi-C data processing. Overview of attention for article published in Genome Biology (Online Edition), ...
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#45HiCPro分析流程详解- 卢锐的博文 - 科学网—博客
本篇接着上一篇《HiCPro的安装与使用》，详细讲解Hi-C数据比对软件HiCPro的分析流程。HiCPro的安装与使用，请查看：http://blog.sciencenet.cn/blog-2 ...
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#46RRID:SCR_017643 - SciCrunch | Research Resource Resolver
Proper Citation: HiC-Pro (RRID:SCR_017643) ... Used to process Hi-C data, from raw fastq files, paired end Illumina data, to normalized contact maps.
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#47三维基因组技术（三）：Hi-C 数据比对及HiC-Pro的使用
Hi-C 原理简介. 1.1 Hi-C技术高通量染色体构象捕获技术( High-throughput chromosome conformation capture )研究全基因组三维构象及分析染色质片段相互作用的实验技术 ...
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#50Error with Ice normalization when running HiC-Pro - BioStars
I am trying to run HiC-Pro to analyze HiChIP data. The software is running fine until the ice normalization step, where I get this error:
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#51[bioinfo]HiC-Proのインストールと実行 – Takeshi Igawa, Ph.D.
HiCデータの解析ツールHiC-Proをインストールする。 基本的にはhttps://github.com/nservant/HiC-Proを参照する。 gitからソースをダウンロード
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#533D-Genome Seminar笔记（二）：Hi-C数据分析流程 - 墨天轮
在安装HiC-Pro之前需要先配置好如下环境 conda create --prefix=PATHWAY python=2.7 source activate PATHWAY conda install -p PATHWAY -c bioconda ...
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#55HiC-Pro 2.11.1 (default version) - Bioweb - Institut Pasteur
HiC -Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. Since version 2.7.0, HiC-Pro can ...
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#56HIC PRO - HGL Systems
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#57安装HiC-Pro （HiC数据预处理工具） - FL的生信笔记
HiC -Pro可以用来处理Hi-C数据，从原始的fastq文件(配对端Illumina数据)到标准化的交互图谱…
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HiC -Pro is an optimized and flexible pipeline for processing Hi-C data from raw reads to normalized contact maps. HiC-Pro maps reads, ...
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#63CALLING VALID READS IN RESTRICTION ENZYME FREE HI-C
generated by the Dovetail Omni-C™ Kit. Methods. To test the Hi-C Pro pipeline on RE-free Hi-C data, a DNase-based Hi-C library was generated.
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#68Installation notes for HiC-Pro version 2.9.0
ver=""; $ cd /programinstallers/; $ git clone https://github.com/nservant/HiC-Pro.git; $ cd HiC-Pro; Edit config-install.txt file if ...
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hic-pro 在 コバにゃんチャンネル Youtube 的最讚貼文
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